RnoINT0017420 @ rn6
Intron Retention
Gene
ENSRNOG00000053288 | Ank3
Description
ankyrin 3 [Source:RGD Symbol;Acc:620157]
Coordinates
chr20:20429801-20431644:+
Coord C1 exon
chr20:20429801-20429923
Coord A exon
chr20:20429924-20431562
Coord C2 exon
chr20:20431563-20431644
Length
1639 bp
Sequences
Splice sites
5' ss Seq
AAGGTATCT
5' ss Score
7.56
3' ss Seq
CTTCTCTCCTTCCTTTTCAGGCT
3' ss Score
12.46
Exon sequences
Seq C1 exon
GTTAGAGACACCAGCCAAGAGCCCTGCGGCCGTCTGTCTTTCCTGAAGGAGCCGAAAACAACAAAAGGATTACCCCAAACGGCTGTTTGCAACTTAAATATTACTCTACCGGCGCATAAAAAG
Seq A exon
GTATCTTTTAAAATGGTTTGTTTCCACTTCACCCCTGGTCTCGGGGCAGTGGGCCCTTGGTATGTAATTAAGGAATGCTTTGTGACACTCCAAAAGCCCCCGAAACTCGAGTCGTGTTAGTCTCAGTGTGTAGTTGCCGTCCTGTTGCTATGGTGTCCTGTTCCTATGAGTCTGTATGATGGCATCCTCTGTGGATTGCTTCTGCTGGTAGTCCGTAGATCTTTATGCTTCCAAATGATCGTCACGCATTAATTTGCCTTGGGTGTATGGTCCGCGCTGCTGTTTTTACTGGGCTCTCTTGCTTTTGCTTTGCTTTCTAAATCAGCTTGCGTTGTGTACTCCTACTCAGTCCTTCTCATATCCTGACACTGTTTTCCCTGCTGTCCATTATAATATTCCTTGTCTCTGCAATGCATCTTGGGACCAAAAGGAGACAGAGTCAGATCAAGATGATGAGGTAATATGAACACTTCTGTTCTTATTCTATCCAAGGTAGACTAGATACTAGATATGCGTGGAAAAGCTTTCTGCGGGCTCAGGTGTGGGAACAGCCAAAATGACCTCGTGCGTCTTAGCGGATCCTGAGGTGGAGTTAGCTTTCTTGAAGGTGGCTCACTCTTCCTCGCTGTGCATGAACGGGTGCTTCAGCGCATTCTGCAAAAGCCATAGCGAGTGAAAAGACCTGGAGCTGCTCACGCATTTTTAAACATGACAGATCGCCATGCAGCGAATTAATATTGTTTCTTGTTTCCCCGGGCGAATTTTACTCTCCACTGCCCTCTGCCCATTTTATCCTGTCACTTGTAACTCAAGACTTTGGTTATCATATGGAATTGTGTTGTACAAATCAACTATGTCTTACGTATGTAAAAATATTTTCTAACCGACTGTGGATAGATATTTTGCCATTCTGGCTAAAGAATTTGTCTTGGCCATTTTAAAAAAGGATTTTCTTTTTTAAACTATGTGTCTATGTGTTTATGTGTGGGTGTGCATACACGAGTGTAGTGCCTGTGGAAGCTAGGAGAGGACATCACACACACACACACACATACACACACACACAGACGCACGCATGCACACACACACGCATGCACGCACGAGATTGTAAGCTGTGTTTTAAAGAGTACCATTGTTCAGTTTTACAAGAGTTTTTCCCTGATACCTCCACATATTCCTGTAATTGGATTTTTTTAAAAGCCCATGTGCCAATAATAGTGGCCATTCAAGTCTCACAACGGCCGACAAGACCATCTACCTGTTTTTAGTCTTCTCATCTCTGCTACGTGCCTGTCCCCGGTCCCCACAATGGCTATTAGAATGATGCTTTCTGTACCTCGTAGTGAGCGTGCTCTGTGATATGTGTGTGTGCTTTCAAGGTAACGAGCCGGGGGAGGGTGGGGAGGGACTCACCTTGCGCCCTCTGAAGTCCTGTGTAGTCTGCTGTGTGTGTACCTCAACCTGCCGAGGTGCGGTCATGTGGTTGAGAGTTCAGGGTGGGATTGGGTAGAAGCCCAAGGGGGGTAATAAGAGGGCCTAAGGCTGGACAGGACATGGCCATCCCATCCAGTGAAATGTGTCAGGGCATAAAGGTGTCACGGAGGAGGTGGAAACACTGTCTTCTCTCCTTCCTTTTCAG
Seq C2 exon
GCTGAGAAGGCAGACAGACGCCAGAGCTTCACATCCCTAGCCTTACGTAAGCGCTACAGCTACTTGACTGAGCCCAGCATGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000053288:ENSRNOT00000077620:34
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.052 A=NA C2=0.126
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TAGAGACACCAGCCAAGAGCC
R:
CTGGGCTCAGTCAAGTAGCTG
Band lengths:
198-1837
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]