MmuINT1004280 @ mm10
Intron Retention
Gene
ENSMUSG00000069601 | Ank3
Description
ankyrin 3, epithelial [Source:MGI Symbol;Acc:MGI:88026]
Coordinates
chr10:69980272-69982197:+
Coord C1 exon
chr10:69980272-69980394
Coord A exon
chr10:69980395-69982115
Coord C2 exon
chr10:69982116-69982197
Length
1721 bp
Sequences
Splice sites
5' ss Seq
AAGGTATCT
5' ss Score
7.56
3' ss Seq
TGTCTTCTCTTCTCTTTCAGGCT
3' ss Score
12.99
Exon sequences
Seq C1 exon
ATCAGAGACACCAGTCAAGAGCCCTGTGGCCGCCTGTCTTTCCTGAAGGAGCCAAAGACAACAAAGGGATTACCCCAAACAGCTGTTTGCAACTTAAATATTACTCTGCCGGCACATAAAAAG
Seq A exon
GTATCTTTTAAAACTGGTTTGTTTCCACTTTTCCCCTACCCCTGATCTCGGGGCAGTGGGCCGTTGGTATGTAATTAAGGAATGCTTTGTGACACTCCAAAAGCCTCCAAGTCGTGTTAGTCTCTGTGTGTAGTTGATGTCCTGTTGCTACGGTGTCCTGTTCCTACGAGTCTGTATGATGGCATTCTCTGTGGATTGCTTCCGCTGGTAGTCCGTAGATCTTTATGCTTCCGAATGATTGTCACGCATTAATCTGCCTTGGGTGTATGGTTCGCGATGCTGTTTTTATTGGCTTCTCTTGCTTTGCTTTGCTCTCTAAATCAGCTTGCCTTGTGTGCTCCTACTCAGTCCTTCTCATATCCTGACACTGTTTTCCCTGCTGTCCATTATAATATTCCTTGTCTCTGCAATGCATCTTGGGACCAAAAGGAGACAGAGTCAGATCAAGATGATGAGGTAATATGAAAACTTCTGCTCTTATTCTATCCAAGGTAGACTAGATATCGGATATGCGTGGAAAAGCTTGCAGCGGGCTCAGGTGTGGGAACAGCCTAAATGATCTTGTGCCTCTTAGCCGATCCTGAGGTAGAGTTAGCTTTCTTTAACGGGGCTCACTCTTCCTCGCTGTGCATGTAGGGGTGCTTCAGCGCATTCTGCAAAATAAATAAATAAATAAATAAATAAATAAATAAATAAATAAATAAATACAATAATAATAATGATAGCCAGTAAAAAGACCTGGAACCGCTAAAGCATTTTTAAACATGTCAGATCGCCATGCATCAACTTAATATTAAGTTTCCTGGGGCATATTTCACTACCCACTGCCATCTGGCTGTTATGCTGTCACTTGTAACTCAAGACCTTGGTTATCATATGGAATTGTGTTGCACAAATCAACTATGTCTTATGTATGCAAAAATATTTTCTAACCAACTGTGGATAGACATTTTGCCAGTCCAGCTAAATAATTTATCTTGGCCATTTTTAAGAAAAAGATTTTCTTTTTTAAATTATGTGTATATGTGTTTATGTGTGGGTGTGCGGACATGAGTACAGTGCCTGTGGAAGCCAGGAGAGGATATTTCACACACACACACACACACACACACACACAAGATTGTAAGCTGATTGATGTGGGTGTGGGACCCAAGCTCAGGTCCTTTGCAAGATCAGTATGCGCACTTAACCTCTGCCCCAGGGATCCAGCCCTGTCTTGACCATTTTCTTTAAAACAGTACCATTGTTCAGTTTTGTAAGAGATTTTCCTGTTATCTCCATGTATTCCTGTAAGCTATTGATATTCAGATTTTTTAAAAGCCCATGTCCCAATAATAACGGCCGTCCACCTGTTTTGAGGCTCCTCATCTCTGCTACGTGCCTGTCACCAGTACCCACGATGGCTATCGGAATGATGCTTTCTGTACCTTGTAGTGAGCGTGCTCTGTGATATGTGTGTGTGTTTTCAAGATAACGAACTGGGGGAGGCGAGGACGCTCACCGTTCACCCTTTGTAGTCCTCTGTAGTCTGCTGTGGGGGCGTGCCTTTATCTGCTGAGGCGCAGTCATGTGGTTGAGAGTTCAGGGCGGGGCTCGTAGAATCCCCAGGGGAAACGGAGTGCCTAAGGCTGAGCGAGCCATGACCATCCCATCCAGGGAAATGTTTCAGGGTGCGAGGTGTCGTGGAGAAGGTGGAAACGGTGTCTTCTCTTCTCTTTCAG
Seq C2 exon
GCTGAGAAGGCAGACAGACGCCAGAGCTTTGCCTCCCTAGCTTTACGTAAGCGCTACAGCTACTTGACTGAACCCAGCATGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000069601:ENSMUST00000182884:35
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.062 A=NA C2=0.113
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Skipping Isoforms:
ENSMUSP00000061698, ENSMUSP00000090087, ENSMUSP00000090088, ENSMUSP00000090089, ENSMUSP00000090090, ENSMUSP00000138095, ENSMUSP00000138123, ENSMUSP00000138285, ENSMUSP00000138326, ENSMUSP00000138337, ENSMUSP00000138347, ENSMUSP00000138348, ENSMUSP00000138356, ENSMUSP00000138413, ENSMUSP00000138481, ENSMUSP00000138586, ENSMUSP00000138623, ENSMUSP00000138671, ENSMUSP00000138686, ENSMUSP00000138770, ENSMUSP00000151906
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GACACCAGTCAAGAGCCCTGT
R:
TCATGCTGGGTTCAGTCAAGT
Band lengths:
199-1920
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types