GgaINT0041372 @ galGal3
Intron Retention
Gene
ENSGALG00000003135 | Q90717_CHICK
Description
NA
Coordinates
chr6:10140609-10143674:+
Coord C1 exon
chr6:10140609-10140635
Coord A exon
chr6:10140636-10143592
Coord C2 exon
chr6:10143593-10143674
Length
2957 bp
Sequences
Splice sites
5' ss Seq
GAGGTAATA
5' ss Score
7.96
3' ss Seq
AGCATTATGTTTTGTTGCAGACG
3' ss Score
7.6
Exon sequences
Seq C1 exon
GAAACAGAGTCAGATCAAGATGATGAG
Seq A exon
GTAATATAAACACTGTCTTCTGTTTTTATTTTCTTCAGATTTAGTGAAGAACAGTAAATATGTTATAGAAAAAAGAAACAAAAAAAAACCTATGGCATTGAAGTAATACATACAGAATAACCATTTTCCCAACATCTTATATTCTGTTGCAAAACAGTTCACGAATGTAGAAAACAAGACTGTATGTGATGAAAATAAACTACATGTTGAATAACAGTAATCTAACATATAACTAATTTTCTTCTGGAAAAAAAAAAATGGCATAATAACAAAGTAGTGACCAAGACTATTTTTGGCCAAATCAGGAAGACGGTGTGATTTTTAGCTCTTGGAATAATACTGCCAGTGTTTTGATAACTTGCTTATCTGAAAAGGTCACTCTGAAAGTAATGCCTCCTATTTATTTCCATGGAAACAACAACAACTACAAAGGACACAATAACACTATTTTGATAGAGCAAAATCTCTGCTACAAAACATTCTCTTTTAACACAGTCATCACCAGTAGCTGTGCATATTTGCCAGCAATGAACATGAGCCTGCATGCTGTGCTCATAAAAATCTACACTAGTGAAGGTGAGCCACTGTTTCACAGCTGCTATGACAGCATTGATGCTAGAAAAATGTTGGTCATGCAGTCCATCTTTCGTGGGCCCAAACAGATGGAAGTCAGAAAGCACCAAATCCAGACTATACAGTGGGTGTGGTTGGACACTCCAGCCCAGATTGGCTATGTGCTCCATTATCTTCGAACTGGTATGGGGCCTGGCGTTATTGTGTTGCAAGAGATAGGCTGTCCTCTGGACTGACTTTGGAATTCTGAGCGTGCAGCTTAGTCAGTGTTGTAGTATAGCAGTCAGAGTTGATGGTTTGTCTGAGTTCCAGGAAATCCAGAAGGATCACTTCTTTCCTATTGCAAAAGACAGTGAACATCGCTTTACCCACTGAGGGCTGTGTCTTGAACCTTTTCTTCAATGTGGAATTCACATGTTGCCACTCTGTGAACTGCCGTTTTGAGTACGGCTTGTAGTGGTGGCACTGCATCTTGTCACTGTTAATGATCAGATCTAGGCAATTGTCACCTTCAGCCTTGTATTGGTTGAATAGGTCCTCACAAACTTGCACACATTGTTCTTTCTGTTCCCATGTATGTATTCATGGGACTCACCTGGCACAAGCTTTGCAATGTTCCAATGTTGCCACCATCATTTTCAGTGCGTTGAAGCTGATCCGCAGCTCTGTATGCTGTTCCTTGGCTGTAATCCACTGATCTGTGCATGAGCTGACCGAGACACTTTTCATTTTGTGATGTGACAGCTGTGCATGGTCATCTGGAATATGGCTTGTCTTTCGCATCGCTGTCACCACTGTTGAAATGCACCACCGACTTCACAGTGCTCACATGCACTGTTTGGTCTCCATAAATGTTCAGGAAGCATCAATGAATGTGAATGGGTGCCACTGTTTCCACATGGAGGAATTCAGTGATACACCTTTGTTTCATGCACACTTAGATGTCACACGACTGCCTCTCTGCTGTCATCTGTTACACCACAACAGAATACTGGTGGGAAGGTTCATCCTCTACTACCATCCCACCAACATCCACCTCTGATGTTGTGGGCCAACATAATAAAATAGGAGGCATTAGTTTCGGAGCAGACCTCCTATTTTATTTCTGAAAATAAACTAAACCCTTCTAAAAAAAAAAAAAAAGCAAAATAACCAAGAGCAATTCCTATTGTGTATAAATCTATTTTCAAATAAACCTTAAATATTTGCAGCTTAGAAATGCCCACTTTGCCAGAAACTGCCACGTCTGATTGTCAGGAAATGGTGTGGGTTTTACTCTTTAGAGATAGCAATAATTGAGATCACCGTAAGAAAGAAACCACACAAGATACATCCCTTCTACTTAGCAGCAAACCTTTTTTCTCTTCCTGGTAGAAAACAAACTGCAGCAGCCATCTGCTGACCAAAATAGAAATAAAACACTCCTTATTATGTTAAAAAAAAATAACTCCAACTTTATCACATTGCCTCCACAGGGTTTGATCCTGGTGAACTTGTATATAGCTAAAACAAGTTTTCTATCTAAACAAATTAAATCTTGCTAAACAATCGAGTGAGCTGATTTCTAAAGGACTTCTGATATTGAAGACATCACACTAGCAGCTATGCCATTCAATGCAGTTACTTACGGTGCACTTTACTAGTTAACAATAGTAATCTGCTTTCTAATCTGCATCTTTGCATTTTGTGCCTATTAAAAAAAAAATCCCCTCCCTTGCCTTTTTTGTCCTTAATGTATTCACTTGAAAGCCAGTGTACATCATGGTGTATGTGCTTCCAGGACAAATTAATTTGGGGAGAGATATTTGATCAAAGTTGTACTTCTCTGAATGTTGTATGTCTGCATCTGTAGTCTTTTGTGTTGATCTCCTGTTTCCAGTCAAAGGTGGTTTATTTTATAGAGAATGAAAAATATCATGCCATTTGTAGTCGTATGAAGCAGTTTGCTAAGTGATGGTGGGATAACATAGTATTGAAATACAGTAGGGCAACAACGTGAGCTGTGTCTGCTATTTAAGCTCTTCCACCTCGTAAGCAGAGACATTGAGAAGGAATGAGTCTATGGGATTATCTCCTAGGGTTGCAGCTTCTTGCTTGCTTTCTCTAGGAGGGTGGTTGTTCACAGCAAGTGCCGGCCACCTCTGATAGCCATGCTCCCTGCTCCACAACACCTGACACTCATTACATGGCAGGCAGGAATGGAGATCGGCTCTGTCCATTTCTCACTGCTTGCCCAAATTTGCCTCCAGCATGCCATCCTGAAGCTGAGTGGAGGCATCAGTTCTCCCTCGTGGGGATGTGTACTGCAGAATGTCCTGTCGTGCTGAGGTTTGATGATGGTTCATATGGGGGATGGTACCAAACAGCATTATGTTTTGTTGCAG
Seq C2 exon
ACGGAGAAAGCCGACCGGCGTCAGAACTTTGTCTCCCTTGCTTTACGTAAGCGCTACAGCTATCTGACTGAGCCTGGAATGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000003135:ENSGALT00000004956:35
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=0.085
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]