HsaINT0008162 @ hg19
Intron Retention
Gene
ENSG00000151150 | ANK3
Description
ankyrin 3, node of Ranvier (ankyrin G) [Source:HGNC Symbol;Acc:494]
Coordinates
chr10:61840295-61841934:-
Coord C1 exon
chr10:61841908-61841934
Coord A exon
chr10:61840377-61841907
Coord C2 exon
chr10:61840295-61840376
Length
1531 bp
Sequences
Splice sites
5' ss Seq
GAGGTAATA
5' ss Score
7.96
3' ss Seq
TTTTTTTTTTTCCTTTTCAGATT
3' ss Score
14.12
Exon sequences
Seq C1 exon
GAGACAGAGTCAGATCAAGATGATGAG
Seq A exon
GTAATATAAACACTTCTGCTTTTATTCTATCAGAAGTAGAATAGAAATTGAATCTGTATGACAGAAGTTGCAGAGGGCTAAAGTGTGGGAAACATATAAATTATATTTTTCAGGTCTTAAGTAGGTAAAAGGGTATATATTTTTCTTAAATGGTTCACTCTTCTTCCACACGTACTTAAGAGTACTTAAATATATTCAACGAAATTATAATTCAGCTGATGATTCAGAAACTGAAGGTCTTTAAACATTTTTAAATATGGTAGATTGGCATGTATAAATAAACGTTAAAAATTTTTTTAGACAAGTCAAGTGCAATAGTGAGAAAGGGGGAAAAGAGTAGGACCAGGAAGTTCTATCTATGACTGACGAGAACAGTCAACTGAGATAACGCACTACCTTCGAACCCGCCAAATAGACATTTTGTGAAAGTTTCATGTGCCTATTTTACTATCAACTATATCCTACTATCCAGCATGTTATAACATTTAAATCAAGATCACGTTTAATATGTGCAATTTTATTGTACAAATAAACTTATGTTGTATGTGATACAAAATATTTGCTTACTAGCTATTGATAAATCTTTGATACTCTCACTAAAGAAATTTATCTTGACCATTTTTTTAAGAATATAGTTCAATTAAGTTGTCTCCTAATGTTTCTCTAAGTTATATGATAATTAGGTTTTTGAATCCCACACATCAATAGTAATAAATAGAATCAAGTAGCCTTAGGATGCAGTAATAGTACCTCTGGCCAGGCGTGGTGGCTCACGCCTGTAATCCTAGCACTTTGGGAGGCCGAGGCGGGGATGGGGTGGGGGAATCACCTGAGGTCAGGAGTTCGACACCAGCCTAGCCAACATGGCAAAACCCTGTCTCTACTAAAAATACAAAAATTAGCTGGACGTGGTGCTGCATGCCTGTAATCCCATCTACTCAGGAGGCTGAGGCAGAATTGCTTGATCCCAGGAGGCAGAGGTTGCAGTGAGGCGGGATCTCACCACTGTACTCCAGCCTGGGCTACAAGAGCAAGACTCCGTCCCTACCCTCCTCTGCCCGCCCCACCAAAAAAAAAGTACTTCTAACAAAACCATTCATCTGTTTTCAATCTCCTCATCTACACTTTATGCCTGTTAACATACAGAATCCCCAGCAGTAATTGGAATAATAAACTTTGTGTGCCTTTCTCCCTTGAATGTACTCACATAGAGTGAGTGTACTTTGTGATATATGTGCTTTCAATATGAACAGTTCCAGGAAAATTTAATGCTCAGCATCAGAAGTCTCTGTAATGCTTGTCTTTTACTTGTACTTCCCTGTAGTCTGCTGTGTTGGTGCTCTTAAATTTGCCAAATGATGATTTTGGTTAAGACATGGGGGGTGGGGTTACAAAATCCCAGTGGGAAATTAACATTTCCTAAGAAGGAAAATAAACAAGTTATCAACATGCCATCCTACAAAATGTCTTAAAACTGAAGATGTCACAGGGAAGTTGGAAATAGAGTTGTCTTTTTTTTTTTCCTTTTCAG
Seq C2 exon
ATTGAGAAAACAGATAGACGACAGAGCTTCGCATCCTTAGCTTTACGTAAGCGCTACAGCTACTTGACTGAGCCTGGAATGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000151150-ANK3:NM_020987:35
Average complexity
IR-C
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=0.217
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)