HsaINT0013798 @ hg19
Intron Retention
Gene
ENSG00000115966 | ATF2
Description
activating transcription factor 2 [Source:HGNC Symbol;Acc:784]
Coordinates
chr2:175982718-175983097:-
Coord C1 exon
chr2:175982979-175983097
Coord A exon
chr2:175982847-175982978
Coord C2 exon
chr2:175982718-175982846
Length
132 bp
Sequences
Splice sites
5' ss Seq
AAAGTATGT
5' ss Score
6.93
3' ss Seq
CCTTATTATTTGAATTATAGATG
3' ss Score
5.93
Exon sequences
Seq C1 exon
ATCAGACCCCAACACCAACAAGATTCTTGAAAAACTGTGAAGAAGTGGGTTTGTTTAATGAGTTGGCGAGTCCATTTGAGAATGAATTCAAGAAAGCTTCAGAAGATGACATTAAAAAA
Seq A exon
GTATGTTGTAACCATGAAATTTAAAAAGAGTACTTCTGACAGAAAAGTAATCATAGTTTATACTTCCTGCTTTTTAAATTTAGACACACTGTTTTTGAACTTATAACCTTTTCCTTATTATTTGAATTATAG
Seq C2 exon
ATGCCTCTAGATTTATCCCCTCTTGCAACACCTATCATAAGAAGCAAAATTGAGGAGCCTTCTGTTGTAGAAACAACTCACCAGGATAGTCCTTTACCTCACCCAGAGTCTACTACCAGTGATGAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000115966-ATF2:NM_001880:6
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.360 A=NA C2=0.749
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
ENSP00000264110f3310A, ENSP00000264110f3311A, ENSP00000340576, ENSP00000376327, ENSP00000386326, ENSP00000386526, ENSP00000387093, ENSP00000389504, ENSP00000402190, ENSP00000402229, ENSP00000406995, ENSP00000407911, ENSP00000410086, ENSP00000410224, ENSP00000412293, ENSP00000414171, ENSP00000416854, ENSP00000437952, ENSP00000443513
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCAGACCCCAACACCAACAAG
R:
CATCACTGGTAGTAGACTCTGGGT
Band lengths:
242-374
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)