RnoINT0022300 @ rn6
Intron Retention
Gene
ENSRNOG00000001597 | Atf2
Description
activating transcription factor 2 [Source:RGD Symbol;Acc:621862]
Coordinates
chr3:60752747-60753137:-
Coord C1 exon
chr3:60753019-60753137
Coord A exon
chr3:60752876-60753018
Coord C2 exon
chr3:60752747-60752875
Length
143 bp
Sequences
Splice sites
5' ss Seq
AAAGTATGT
5' ss Score
6.93
3' ss Seq
TTCTTTATCGTTTGTATTAGATG
3' ss Score
7.79
Exon sequences
Seq C1 exon
ATCAGACTCCAACGCCAACAAGGTTCCTAAAAAACTGTGAAGAAGTGGGTTTGTTTAATGAGTTGGCAAGTCCATTCGAGAATGAATTCAAGAAGGCTTCAGAAGATGACATTAAAAAA
Seq A exon
GTATGTTGTTAACCATGAAATTATAAAACGAATACCTTTATTAGGACACAATGATGGTTTTCACTTCCTGATTTCTGAATTTTAACATTGTACTTGGTCATTTTTTTAACTTTTTACAAAGTTTTCTTTATCGTTTGTATTAG
Seq C2 exon
ATGCCTCTAGATCTGTCCCCTCTTGCAACACCCATCATAAGAAGCAAAATTGAGGAACCTTCTGTTGTAGAAACAACTCACCAGGATAGCCCGTTACCTCACCCCGAGTCTACTACCAATGATGAAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000001597:ENSRNOT00000002174:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.438 A=NA C2=0.814
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCAGACTCCAACGCCAACAAG
R:
CATCATTGGTAGTAGACTCGGGG
Band lengths:
242-385
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]