MmuINT0020240 @ mm10
Intron Retention
Gene
ENSMUSG00000027104 | Atf2
Description
activating transcription factor 2 [Source:MGI Symbol;Acc:MGI:109349]
Coordinates
chr2:73850589-73850982:-
Coord C1 exon
chr2:73850864-73850982
Coord A exon
chr2:73850718-73850863
Coord C2 exon
chr2:73850589-73850717
Length
146 bp
Sequences
Splice sites
5' ss Seq
AAAGTATGT
5' ss Score
6.93
3' ss Seq
TTTTTTATCATTTGTATTAGATG
3' ss Score
6.89
Exon sequences
Seq C1 exon
ATCAGACTCCAACGCCAACAAGATTCCTAAAAAACTGTGAAGAAGTGGGTTTGTTCAATGAGTTGGCAAGTCCATTTGAAAATGAATTCAAGAAGGCTTCCGAAGATGACATTAAAAAA
Seq A exon
GTATGTTGTTAACCATGAAATTATAAAAAGAATACTTCTATTAGGAATACAATGATGCTTTTCACTTCCTGGTTTCTTAAACATTTTGCTTGGCTGTTTTTTATAAACTTTTTACAAAGTTTTTTTTTTTTTATCATTTGTATTAG
Seq C2 exon
ATGCCTCTAGATTTGTCCCCTCTTGCAACACCCATCATAAGAAGCAAAATTGAGGAGCCTTCTGTTGTAGAAACAACTCACCAGGACAGCCCTTTACCTCACCCCGAGTCGACTACCAGTGATGAAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000027104:ENSMUST00000112016:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.400 A=NA C2=0.809
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATCAGACTCCAACGCCAACAA
R:
ATCACTGGTAGTCGACTCGGG
Band lengths:
242-388
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types