HsaINT0013798 @ hg38
Intron Retention
Gene
ENSG00000115966 | ATF2
Description
activating transcription factor 2 [Source:HGNC Symbol;Acc:HGNC:784]
Coordinates
chr2:175117990-175118369:-
Coord C1 exon
chr2:175118251-175118369
Coord A exon
chr2:175118119-175118250
Coord C2 exon
chr2:175117990-175118118
Length
132 bp
Sequences
Splice sites
5' ss Seq
AAAGTATGT
5' ss Score
6.93
3' ss Seq
CCTTATTATTTGAATTATAGATG
3' ss Score
5.93
Exon sequences
Seq C1 exon
ATCAGACCCCAACACCAACAAGATTCTTGAAAAACTGTGAAGAAGTGGGTTTGTTTAATGAGTTGGCGAGTCCATTTGAGAATGAATTCAAGAAAGCTTCAGAAGATGACATTAAAAAA
Seq A exon
GTATGTTGTAACCATGAAATTTAAAAAGAGTACTTCTGACAGAAAAGTAATCATAGTTTATACTTCCTGCTTTTTAAATTTAGACACACTGTTTTTGAACTTATAACCTTTTCCTTATTATTTGAATTATAG
Seq C2 exon
ATGCCTCTAGATTTATCCCCTCTTGCAACACCTATCATAAGAAGCAAAATTGAGGAGCCTTCTGTTGTAGAAACAACTCACCAGGATAGTCCTTTACCTCACCCAGAGTCTACTACCAGTGATGAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000115966:ENST00000264110:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.368 A=NA C2=0.761
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCAGACCCCAACACCAACAAG
R:
CATCACTGGTAGTAGACTCTGGGT
Band lengths:
242-374
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development