HsaINT0016795 @ hg19
Intron Retention
Gene
ENSG00000076108 | BAZ2A
Description
bromodomain adjacent to zinc finger domain, 2A [Source:HGNC Symbol;Acc:962]
Coordinates
chr12:56998369-56999111:-
Coord C1 exon
chr12:56998857-56999111
Coord A exon
chr12:56998584-56998856
Coord C2 exon
chr12:56998369-56998583
Length
273 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGT
5' ss Score
10.67
3' ss Seq
TTATGCTGTCCTCCACACAGTCC
3' ss Score
8.86
Exon sequences
Seq C1 exon
CCCCTGCCTGACTTCTCACGAGTCCCTGGTCTGACATTGCCCAGTGGAGCCTTCTCAGACTGCTTGACCATTGTGGAGTTCCTGCATAGCTTTGGCAAGGTGCTGGGCTTTGATCCTGCCAAAGATGTGCCTAGCCTGGGGGTCCTGCAGGAGGGACTCCTGTGTCAAGGTGACAGCTTGGGTGAGGTGCAAGACCTGCTGGTCAGGCTGCTGAAGGCTGCACTCCATGATCCTGGCTTTCCCTCCTACTGTCAG
Seq A exon
GTGAGTGCAAGTCCCTCCCAAAGTAACCAGGACAAGTAAAGGAGATGTAACTACTTAGTGTTTCTCTTTTCCTTATATTTTTCCATTTCTTTTTCTTCCTGACTCCTCTCCTTATTTTATTTTTCTTTATTTTTTCCTTTTCTTTTGTGGTCTTCTTTCGTATTCTGTCTTAACCCCCATAGTTCTCTTCTGATGTATTTTCCTCTTGCACATTCACCCAACTTGGTTGTGCATCTTTCCCTACTCACCCCCATTATGCTGTCCTCCACACAG
Seq C2 exon
TCCCTAAAGATCTTGGGGGAGAAGGTGTCTGAGATCCCACTGACAAGAGACAATGTGTCAGAGATCCTGCGCTGCTTCCTTATGGCATATGGAGTAGAGCCAGCCCTCTGTGACCGCCTGCGCACCCAGCCTTTTCAGGCCCAGCCACCCCAGCAGAAGGCTGCTGTCCTGGCCTTCCTTGTGCATGAGCTCAATGGCTCCACCCTCATCATCAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000076108-BAZ2A:NM_013449:14
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.024 A=NA C2=0.014
Domain overlap (PFAM):
C1:
PF0449910=SAPS=PD(31.1=83.5),PF0279112=DDT=WD(100=74.1)
A:
NA
C2:
PF156121=WHIM1=PU(80.0=55.6)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAAGGTGACAGCTTGGGTGAG
R:
TGATGATGAGGGTGGAGCCAT
Band lengths:
304-577
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)