DreINT0036835 @ danRer10
Intron Retention
Gene
ENSDARG00000102974 | baz2a
Description
bromodomain adjacent to zinc finger domain, 2A [Source:ZFIN;Acc:ZDB-GENE-041010-202]
Coordinates
chr23:6769268-6770999:-
Coord C1 exon
chr23:6770745-6770999
Coord A exon
chr23:6769483-6770744
Coord C2 exon
chr23:6769268-6769482
Length
1262 bp
Sequences
Splice sites
5' ss Seq
CAGGTTTGT
5' ss Score
7.44
3' ss Seq
ATCGAAGGTTTGCGCGTCAGTCT
3' ss Score
-1.44
Exon sequences
Seq C1 exon
CCTCTGCCTCCACTAACACGGATACCAGGACTGAAGCTCTCGGGTTTGGCTTTCTCTAATTGTTTACGGGTGGTTGAGTTCCTCCATGGCTATGGCAAGATTCTGGGACTTCAGGTGCCCAAGGACATCCCCAGTCTTATTACCCTGCAGGAGGGGCTTCTGGGCATGGAAAAGAGCCAGGGTGAACTGCTGGATCTGCTCATCAAACTGGTGGAGTCCGCGCTGCATGATCCTGGACTGCCCTCGTATTATCAG
Seq A exon
GTTTGTCTTACTCTAAGTGTAATATCAAAAAGATGATATAGATATACTGATATTTAGCAGGGTAATTAAAAGTCTTTACACCTTAGATTTAAACTAATTGAATTTTATAAATTGGAAAATTGCTAAATGTTTTTTTAATTCATATAAAAGTGTAAAGCAACATGTGTATTGGAGGTAATGTATAGCCCGACGTCTTGGGGCTTTTTCATTCGGGGAACCAAAATCTCCACCTAGGCTTGTTAAAGTACTGGAAATTAATACCAGACGATATTGAAATTTAACAAAGAGGTCAATTTCACATGAACATTTAAGCGCTGTTGGGCACATTCTTAAACGGGACTGATTTCCCAGTGTGTTCACGTGCTCAACAGAAATGACTGCGATTGGCCGTGAAGGTCATCAGTTGACTGAACTCACTGCTGTTTACTTGGTTTAACCACAGATACAGGGACACTTGAATATTTTAAAGCCCTGATTCATCTTAACATTCTTACAGTTGTTTGTATTCAATACTTTATTATTATTATTATTATTATTTTCTTTTTTCCATATCTGTAATACCTGTATTTTGGCTTTTTTTGCAGTCCACTTAGAATCCAACATGGCAATCAATGTTTTCTTTATTGGCATTGATTGTTTTGAAATTCAAATGGCATTGACATGCCTGTGTTTTTATTTCTGTAATAAATATGGCTGTCAGGCCAGGATGTAGATTTTTTTATTGTGGGAATGTTGTTTACATGAAGAAATCTGTATTACAAGTTAAACAAAACTTCTAATAATAAATTATATTTTGAATTTAAATAGTATTTGTCTTGCGTTTACATAAATTTTACATTCGAATAGCCAAAATGACAAGTTTCAGTCTTTTAAATGCGATTAATCACGATTATTATTTTTTTAAGTGCAATTAATTAATAATTTTTTTTATCTATTGACAGTACTAATTTATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATACACATTACGAATATATAGATTTTTTTTTTTACATATACAATTTCAAAATGGTCAAAATTGTATTGTAATTTCTATTTTCATTACTGGTTTCTGTCCTGTCACCGAATTCTGTTCACATAACTAAAATCAAAAAGCTCAACTATGTTCAAGGTCATTTAGGTTTATCTTGAAAAAAGCATTTGATTAGTCAGTAATCGAAGGTTTGCGCGTCAG
Seq C2 exon
TCTGTAAAGATCCTAGGAGAGAAGCTGGTGGATCTTGAGCTGAATCACAGCACAGTGTCTGAGGTGCTGCGGGTCTTTCTGGAAGCCCATGGTTTTGAGATGGAAGTCTGTAACAGCCTCCGTACAAAGAGCTTTCAGACCCTCAAACCCGACGTCAAAGCCTCCATTCTGGCCTTTGTGGTGGAGGAGCTCAACGCCAGCAACATTGTAACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000102974:ENSDART00000157828:13
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.012 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0279112=DDT=WD(100=74.1)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Mouse
(mm10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAGCTCTCGGGTTTGGCTTTC
R:
GCTCTTTGTACGGAGGCTGTT
Band lengths:
354-1616
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]