RnoINT0024797 @ rn6
Intron Retention
Gene
ENSRNOG00000053881 | Baz2a
Description
bromodomain adjacent to zinc finger domain, 2A [Source:RGD Symbol;Acc:1305037]
Coordinates
chr7:2540253-2542374:+
Coord C1 exon
chr7:2540253-2540507
Coord A exon
chr7:2540508-2542159
Coord C2 exon
chr7:2542160-2542374
Length
1652 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGC
5' ss Score
9.6
3' ss Seq
CTATGCTTCCTTCCAAACAGTCC
3' ss Score
9.14
Exon sequences
Seq C1 exon
CCCCTGCCTGACTTCACACGCATCCCTGGTTTGACACTGTCCAGCAGGGCTTTCTCAGATTGCTTGACCATCGTGGAGTTCCTGCACAGTTTTGGCAAAGTGCTAGGCTTTGACCTTACCAAAGATGTTCCTAGTCTCGGAGTCCTGCAGGAGGGGCTCTTATGTCAAGGTGACAGCTTGGACAAAGTGCAGGACCTGCTGGTCCGGCTCCTGAAGGCTGCACTTCACGATCCTGGTTTGCCCTCCTACTGTCAG
Seq A exon
GTGAGCGTTCCCAGGCCTGTGTTACATATAGTTTAGCTCTCTCTTTGAGAACACTTAAAAGCTTCCCTTAAAGAACCCACAGAAGTGGGGCTGGGGATTTAGCTCAGTGGTAGAGCGCTTACCTAGGAAGCCAAGGCCCTGGTGTCGTCCCCAGCTCAAAAAAAAAAAAGAACCCACAGAAGTAAGGGAAATGTAGCTGCTTCTGTTTCTAGCTTTTCTATGCCTTTTTCTCTGCAAGGACTCCTTTGTTCATTTTCTTTTTCTTACTTTGCAGTTTCTTTTGTTGTCTTTCGCCTTTTCTTTTTTCCTTTTTTTTTTTTAAGATTTATTTATTTTATGATGGGAGTACAACTGTAGCTGTCTCCAGACACAGAAGAAGACATCAGATTTCATTACAAATGGTTGTGAGCCACCATGTTGTTGCTAGAATTTGAACTCAGGACCTCTGGAAGAGCAGTCGGTGCTCTTAACTACTGAGCCATCTCTCAATCTCCCTTTTCACCTTTTTCTTTTTCTTTTTTTTTTTCCGGAGCTGGGGACCGAACCCAGGGCCTCTACCACTGAGCTAAATCCCCAACCCCTCACCTTTTTCTAGTAACTTTTTTCCTTAATTTTTTATTTATTCTATGTGTAGACATGTTTTACCTGTCTGTGTACGTATGTGCCTGGTACTACACAGACCACAAAAAGTTGTTGGATCCCCTGAGATTCAGAGTTACAGGCAGTTGTGAGCTGCCGTATGGATGCTGGCAATTTAGCCCAGGTCCTCTGGGAAAGCAAGCCATCGACCACCGCCCCAACTGCTGAGCCATCTCCTCAGCCCATGTCCTGCAACTTTCATTCTTTTTCTCTTTTTTTCCCACAAATAAATTTCTTTTTTTTTTTTTTTTGTTTTTTTTTTGGTTTTTTTTTGTTTTTTTTTTGAGCTGGGGACCGAACCCAGGGCCTTGCGCTTCCTAGGTAAGCGCTCTACCACTGAGCTAAATCCCCAGCCCCCACAAATAAATTTCTTATAGCTAGCTGTGGTAGTGCACACCTTTGGTCTCAGTGACTGGGAGGCAGAGGCAGGTGGGCCTTTTTTAGCCTGTTCTGCAGAGCCAAGTTCCAGGAGAGCCCAGGCTACATAGAGAGTCCCTGAGCTCCCCACCCCCCACAAAAAGGAAGGGTGGGTTAAAAATGTATTATTAAGGTTTAGTTTTATTTTACACAGTTGAGTGTTTGCCTGCATACACATGTGTGTGGTGTGTGTGCCTGGTGACAGTGCAGTCGGAAGACAAGGTTGGTCCCCTGTAGCTGCATTATAGACAGTTTGTAAACGGCCATGTGGGGGTTAGAACCAGACTGTATCCTAGGAAGAGGAATAGCTCTCTCTCTGAAATCCTAAAGTGTTTAAAATTATATTTATCTATTGTGTGTGTGCTTGCATGCATGTATGTGTATGGTCACAGGACAACTTGAGGGGAATCAGTTCTTCCATCAAGTGTGTCTGGGAATTAAAGGTATTCACATCAGACTCAATGGCACGTTTCATGATTGCCAGAGCCGTCTTGCTAACCTCGTTCCTTTCTCTTAACCCTGAGATTTTCCCAGTTTCCCCAACTTGAGTTGTTCCTATTTCCCTTCTCATTTCCACTATGCTTCCTTCCAAACAG
Seq C2 exon
TCCCTAAAGATCCTGGGGGAGAAGGTGTCAGAGATCCCATTGACCAGAGACAATGTGTCTGAGGTACTGCGCTGCTTCCTCATGGCATACAGAGTGGAGCCGTCCTTCTGTGACAGTCTGCGAACTCAGCCTTTTCAGGCCCAGCCGCCTCAGCAGAAGGCTTCTGTCCTAGCCTTCCTTGTGCATGAGCTCAACGGCTCCACCATTGTCATCAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000053881:ENSRNOT00000079383:13
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.012 A=NA C2=0.042
Domain overlap (PFAM):
C1:
PF0279112=DDT=WD(100=74.1)
A:
NA
C2:
PF156121=WHIM1=PU(80.0=55.6)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCAGGGCTTTCTCAGATTGCT
R:
CCTGAAAAGGCTGAGTTCGCA
Band lengths:
351-2003
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]