BtaINT0025056 @ bosTau6
Intron Retention
Gene
ENSBTAG00000017840 | BAZ2A
Description
bromodomain adjacent to zinc finger domain, 2A [Source:HGNC Symbol;Acc:HGNC:962]
Coordinates
chr5:57152361-57153759:+
Coord C1 exon
chr5:57152361-57152615
Coord A exon
chr5:57152616-57153544
Coord C2 exon
chr5:57153545-57153759
Length
929 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGG
5' ss Score
10.07
3' ss Seq
TTATGTTCTCCTCCAAACAGTCC
3' ss Score
9.92
Exon sequences
Seq C1 exon
CCGCTGCCTGACTTCTCACGCATCCCTGGTCTGATCCTGCCTAGTGGGGCCTTCTCAGACTGCTTGACCATTGTGGAGTTCCTGCACAGCTTCGGCAAGGTGCTGGGCTTTGACCCTGCCAAAGATGTCCCTAGTCTGGGGGTCCTGCAGGAGGGGCTCCTGTGTCAAGGCGACAGCTTGGGCGAGGTGCAGGATCTCCTGGTGCGACTCCTGAGAGCAGCTCTCTGTGACCCTGGCCTGCCCTCCTATTGTCAG
Seq A exon
GTGAGGCCCTTCCTGGGGTCAGGGGCTTGGGATCCGTGCTTTTCTCAGTTTGGCTTTCTCTTTTGAGTTGAGCACATGAAAGCCCCTTCCAAAGTGATCAGGACAAGTAAAGGGAGATACACAAATGGTCCCCAAATAAGAGTGGTTTAACTTACAATTTTTCAACTCTACAGTGGTTCAAGAGTGATAGGCCTTCAGTAGAGGTACTTAAGGTTTTGATTTTGATCTTTTCCTGGACTGGAGAAATGCAATAGTACACTCTCAAGGTGCTGGGCAGCGAGTCAGCCATGCATGTCACTTTTGCAGCCATTCTGTTCCTCACTTTCAATACAGTATGCAGTAGATTGTGTGAGATATTCAGCATTTTATTAAGTGGATTTGTGTTAAATGATGATTTTGCCTTCCTCTAGGCTAATTTAAATGTTCTGAGCATGTTTAAAGTAGGGTTGGCTAAGCGGTCATGTTCTGTAGATTAGGTGTATTAAATGCATTTTCACAATATTTTCAGTTTATGATGGATTTTTTGGGACATGATCCCATCATAAATTGAGGAAGATATGCATACTACATGCTATGCCTGGTAATTTACTGCCTTTTTTCTTAGGTTATTTCTCATTGCTTTATGATTTTAGGTCCTGATTCTCCATTATTCTCTCTAGGGACAAGTGGAGGAAGATCTGTAGTTTCTTCCTATTTTTGTTTTCCTCTATTTTTTATTTTTCTTTCTGACCTCCCTCTGCTTTATTTTATTCATTTTCCTTTAATATACTTCTTTTCTTTTGTACCTGTCCTTTTTCTTCTCTCATCTTACCCTAGCAACTTTCCTTTTTCTATCTTAACTCTATAGTTCTCTCCTACTTTCCTACTCCAGATTGACTTGAGTTGCTCCTCTTTCTCTCTTAACTCCTATTATGTTCTCCTCCAAACAG
Seq C2 exon
TCCTTAAAGATCTTGGGGGAGAAGGTGTCCGAGATCCCACTAACAAGAGACAATGTGTCTGAGATCCTGCGCTGCTTCCTCATGGCATATGGAGTGGAGCCAGCCCTCTGTGACAGCCTGCGCACCCAGCCTTTTCAAGCCCAGCCACCCCAACAGAAGGCTGCTGTTCTGGCCTTCCTTGTGCATGAGCTCAATGGCTCCACCCTCATCATCAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000017840:ENSBTAT00000038215:15
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.028
Domain overlap (PFAM):
C1:
PF0449910=SAPS=PD(29.9=78.8),PF0279112=DDT=WD(100=74.1)
A:
NA
C2:
PF156121=WHIM1=PU(80.0=55.6)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACCCTGCCAAAGATGTCCCTA
R:
TGATGATGAGGGTGGAGCCAT
Band lengths:
357-1286
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]