HsaINT0016831 @ hg19
Intron Retention
Gene
ENSG00000123636 | BAZ2B
Description
bromodomain adjacent to zinc finger domain, 2B [Source:HGNC Symbol;Acc:963]
Coordinates
chr2:160242864-160245996:-
Coord C1 exon
chr2:160245856-160245996
Coord A exon
chr2:160243119-160245855
Coord C2 exon
chr2:160242864-160243118
Length
2737 bp
Sequences
Splice sites
5' ss Seq
AAGGTAATT
5' ss Score
8.83
3' ss Seq
GTATTTCATTTTATTTTCAGCCT
3' ss Score
6.68
Exon sequences
Seq C1 exon
GAAAAAGAGCGGTTGAAACAAGAAAAACGTGATGAGAAAAGATTAAATAAAGAGCGTAAACTAGAGCAGCGAAGATTAGAATTAGAAATGGCAAAGGAACTAAAGAAGCCTAATGAAGACATGTGCTTAGCAGACCAAAAG
Seq A exon
GTAATTTATACGTCATGTACACCATTTCATTCATAAGTTTAATTTTTCCAGTTTTCTTACCTGATTTCTTTGCCAGAGCTGCTATTGTGAAAGCCTTTCATTTTTAACTATAGCAGTGAATTTCCAACTCTAGGTCAATTTGCCTTTCCTAGATAGCTAGAAGTAAACCTCTCTGGAGCTCTTGTGCTGGTAATGGCGGTTTTTTTGTTTGTTTGTTTGGTTGGTTGGTTGGTTGGTTGGTTGGTTGGTTGTTTTCAGACAGGGTCTTACTCTGTCATTTAGGCTGGAGAGAGGGCAGTGGCAGGATTATAGCTCACTGAAGCCTCAACTTCTCGTTCCCAGGCTCAAGTGGTCCTCTCACCTCAGTCTTCTGAGTTGCTGGGACCACAGGCGCTTGCCACCATGCCTGGCTAGTTTTTTGGGTTTTTGTTATTTTAATTTTTTGTAGCGGCAGACTCTTATGTTGTCCTGGCTGGTCTTGAACTCCTGGGCTCAAGTGATACAGCCACCTCAGCCTCCCAAAGTTCTGGGATTCCAGGCACAGAAAAATCTCAACTCCTCCCCACATCCCTATGGATATTTAAATAAATGAGGATTTATAATCTGTGACCTCCTTCAGTGCTTTAGGTGGCAAACCTTTATTGAACATGTTTACTACATGCTAGGACTGTGCTAAGCACTTATTTGAATTTTCTCATTTAATCCTCAATACAATCTTGTGGAGTTAGTATTTCTTCCCATTTATACATGAGAAAACTGAGACACAAAGAGGTTAAGGAACTTGCCCAAGATTACACAACTAATAAATGGCGATTTGGATTCAAACTCCAGTTTGTTAAACTCCAGAGCCTATACTGTTTATCATCCTGAAAGCCAAGAAACTGTGTCCAACCAAAGCACCTCATATGTGTTTTGTCTTCCATAGTGCTTCACAGACATGTAATGTTGCTGAAATACATAAAAGTATAAATTTAGAAACATTGCTGTAATCTTGGCAACCAGCATAATTTCATATACTTTTGAGTAAAAATCAATGATGTTTTGACTATAGTTAAGAAGATGGTACTTCTAGAAAAATATCAATAATGCATTTCATCTCTATATTATTATACTTAATTAGTAGGATATGTATTTACTTATATGCAATATTCAAATGATTTGCAAATAATGATTATCTCTTGATTTATGTAAGCTCTTTTTTTATTTTATTTTATTATTATTATACTTTAAGTTTTAGGGTACATGTGCACAATGTGCAGGTTAGTTACATATGTATACATGTGCCCTGCTGGTGTGCTGCACCCATTAACTCAATTATGTAAGCTCTTTTCTAAAGTGCTTAAAGAAAACTTTTAGTACTCTAGAATGGATTGAACTATATTAATATTCTATTTATTTACTTAGCATAAATGCTTCTAAATAAAAATGAGAGTATACTTACTAGTTGTAGTCATTTGGATATTTAAATTTTCCTAAGCAGAGAATGGGTATATAAATTAGTTAACACATTTAATAAGCTCATAGTGATCAAGCTTTTTAAATCCTAAGTGAGCTTCATTTTCTTGTATCTTTTATTTTCATTTAAATTCATATGTACTATATCAAATATGTAAGTCCATTTTAAGCCATATTTTTAATAGCTCAGCTTTGCTACATAAATTTTTAGAATTACATAGAAATGTATATGTTTCCTGTGGTTCAAGAAAAAGGGAGAATGAGAATTAACTGGCTTTCAAGAAGAATATAAAATATTTGTATGAGATGAGCTATTATCTATAGTTTTGTGTTTCCACACAGTATTAACAGAAAAAGTCTTCAATTGGTTACCTCAATAAATGCAGAGTGGAGAAATATTTTTGAACAAGGACCAATTCAGATAAATAGAAATATTTATGTCACTTTTTTTCCAATTAAAATTTAAAGTACTTTTTTAGGCTCTCATTAACAGGCAAAATGTTTTTAATTCAGATTACCTATTTATTGAAATTTTAAAATGTTGATGACAACTGGTACTGCAATTAAGTCATTAAAATGTTAATATGTGAGCATATTTGAGAAATAACAACAGAGATAGCTAATTTTAATACTGAAGCTAATACTTGCCTAAATACAGGGAAACCTAAAGACCTTTAGTTGCATTATAACTGGGTTTATGTACAGGGTCATGGATTCTAGTTATGTGGACCTAGTTATTTATCTGCATTCATTAGCCATAGATGGTACCACTTTCTCCAACCATAGAGCCCACAGATGCATGCTGTTTGTTTCTAAGCTACAAAAAAAGTGTGATTTTTAAATGTCATCATCATTAGAAGAAATTGGTGCACATGCCCCTATAAGTATGTCCATGGTAAAGTACTTTTGAAATGTTTATATTTTATTTAATTTTTGCTCCAGTTATATAATCCATGTTTTGTTAATATGGATATGTCAGTTGATTGAATATGCAAGTTGATTAAAATTAATGTCTCTTTTGCAAAGATCTAAGTTCATAATTGAGTTCAACCAAAATTTATTAATGGTTGCTTACTTGTATGAAGATACTTCAAGACACTATGCTTAGTTCCATGGGGGTTACAGAAATGCCCCCAGAGAATTTAGCATCCCAAAGGAAGCTACTGGTACAATACAAGAGGGGAAAAAAGGTAGCAGCTTATTTTACTTTAGAAGATACGAAATCATGGCTTTTAAAAAATTAAGCTGTTTTTATTTTATTTGTATTTCATTTTATTTTCAG
Seq C2 exon
CCTTTGCCAGAGTTGCCTCGTATTCCAGGACTTGTTCTCTCTGGAAGTACATTTTCAGACTGTCTCATGGTGGTGCAGTTCTTACGAAACTTTGGTAAAGTTTTGGGCTTTGATGTGAATATTGATGTTCCAAACCTGAGTGTTCTTCAAGAGGGATTGCTAAATATAGGGGACAGCATGGGTGAAGTACAAGACTTGCTTGTGAGGCTCCTCTCAGCTGCTGTATGTGATCCAGGTCTAATAACAGGATACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000123636-BAZ2B:NM_013450:21
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=0.769 A=NA C2=0.001
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0279112=DDT=WD(100=74.1)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)