DreINT0036871 @ danRer10
Intron Retention
Gene
ENSDARG00000057782 | baz2ba
Description
bromodomain adjacent to zinc finger domain, 2Ba [Source:ZFIN;Acc:ZDB-GENE-070615-37]
Coordinates
chr6:11738616-11740577:+
Coord C1 exon
chr6:11738616-11738756
Coord A exon
chr6:11738757-11740325
Coord C2 exon
chr6:11740326-11740577
Length
1569 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAAG
5' ss Score
9.06
3' ss Seq
CTATTTTTGTTTTTCTCCAGCCG
3' ss Score
9.47
Exon sequences
Seq C1 exon
GAACGCGAACGCCTCAGGCAGGAGAAACGTGACGAGAAACGGCTCAACAAAGAGCGCAAAATGGAGCTCCGGAGGCTGGAGCTGGAGATGATCCGTGAGATGAAGAAGCCAAATGAAGACATGTGTTTGACGGATCACAAG
Seq A exon
GTAAAGGGAATGGATGGAAGGACAAAGTTTTGAACTTTAAAAATCCCCGTATGCATGTTTTTTTTTTGTACAGTGATGCACTTATGTTTCATTCATTAACATATGGTCGATTAACATAATGGCTCGTCCAATCAGAGCTTTCAGAGGTATGATGTAATGCACAGATTCTGACCAAAACACTTTGCAGCGAGTTCACCTTAGACAGAATACTGACACCCAGTGGTCATAAAGACAGTGTTAAAGGGATAGTTCACCCCAAAATGTAAATATGCTCACTATTTACTCATCCTCAAGCTTTCTGAGTTTCTTTCTTCTGTTTGACACAAAAGAAGATATTTTGAAGAAAACTGAAACCATTCCATAGTAGGAAAAACAAATACGATGGAAGCTGATGGCTGCCGGTTTCCAGCTTTCTAGCTTCTCTTGTGTACAACAGAAAAAAATAAACTAAAAGAGTTTTGAAAGAAGTAAAGGGAGAGTAAATGGTGACAGAATTTTCATTTTTGGGTCAGCTATGTCTTTAGGGTGATTTTTTTTTTTATTGCAAATTTTAATAATATAATAGACACTGCATCGTTTCATGGCTCATTTATACAGTACAAATATAAATATACCTGTATTGTCTAAAATTAACAGTTTTTTTAATAATATCAAAGATTATAGCATACTAAAGACATGTCACTATAGTTTTGAATAGGGAAAAGTGTAGCGGTCAATATGGCCAATGAAGCCCTGCCCGCTAGTATAGGAATCAGCGATCAGTAGAGACTGACGATTCTCCAGGAAAGGGGCTAGGACCAGATGTGAATTTCTAATATGCTAATATGAGTTTAATCGTAACCTTGGCAGGCAAGAATTTGATGTTTCTTGATTCAAACTGAATGCCCGAACATTCTGCCCGAGAGGCATTTAATAGATGGCCGCTGAGTGAAATGATTTGCTTTAAAGGGACTTTGCCATTATATAATAAGCTGATTTATATTATTGTTATCTAGAGCATTATTTCCCAAGCAGGGGTTCCTGAGGGAACTCCATGGAGGTTTGTGAATTCAAAAATTAATAATTAATTTGACTGAACATAAAAATGGGGCTGCACATTAGTCTCAATCAAATACAGTACTGTTATCAAAATAAAGGCAGTGATTTAATCAAATAACTCTAATGTGCTGTATGTGTCAGTGTAAAGCAGTAAATCACATTTATTTTTTTGTAAAAAAAATATATATACAATGAATTTTTGTGGTTATTATGTTTAGAATATATTTAATTTTAATTATCCTATTTTAATTAGATAAAATATGCTACTACTGCTCTTAATAAAAAAATAATGAAATAATAACTTAATCAGCTTTAAAAACACAGGAACATTAAGTTAGTAATTATTAAAATAATACTAAATAAATATTCTAGTTTTTTGATCAAGGATGCAAAATACAAGTACTTTTCTTCATATGATTTGAACAAAACGTGTGAACCTCACAATATTATTGTAATTATTAGGTTGCATTTGCTCATTAACTTATGTCATCTTGATAAACTGTCTTTCTCACTATTTTTGTTTTTCTCCAG
Seq C2 exon
CCGCTTCCGGGGGTTCCTCGTATCCCGGGTCTGGTTCTGCCTGGCAGTGTGTTTTCAGATTGCCTGATGGTGGTGCAGTTCCTGCGGAGCTTTGGGAAGGTGTTGGGCCTGGACTCCTCTGAGTTGCCCACTCTGGGGATCCTGCAGGAGGGGCTGCTCAACCTGGGCAACAGCATGGGCCAGGTGCAGGACCTGCTGGTGAGACTGCTCTCGTCTGCGGTGTCTGACCCAGGACTGCCTCAAGGACACAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000057782:ENSDART00000151044:21
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.702 A=NA C2=0.036
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0279112=DDT=WD(100=73.8)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCAGGCAGGAGAAACGTGAC
R:
TCAGACACCGCAGACGAGAG
Band lengths:
356-1925
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]