RnoINT0024824 @ rn6
Intron Retention
Gene
ENSRNOG00000056984 | Baz2b
Description
bromodomain adjacent to zinc finger domain, 2B [Source:RGD Symbol;Acc:1309801]
Coordinates
chr3:45996379-45998492:-
Coord C1 exon
chr3:45998352-45998492
Coord A exon
chr3:45996634-45998351
Coord C2 exon
chr3:45996379-45996633
Length
1718 bp
Sequences
Splice sites
5' ss Seq
AAGGTGACT
5' ss Score
6.64
3' ss Seq
TACTTGTGTTTTGCTTGCAGCCC
3' ss Score
8.72
Exon sequences
Seq C1 exon
GAAAAAGAACGATTGAAGCAAGAGAAACGTGATGAGAAAAGATTGAATAAGGAACGCAAACTAGAGCAACGGAGATTGGAGTTAGAAATGGCGAAGGAGCTTAAGAAACCCAAGGAAGACATGTGCTTAGCAGACCAAAAG
Seq A exon
GTGACTCATGCCAGGCATACCTTCCACTGACCCCCCATCTCTCCAGTTTTCTCAATGGATTCCTTTTCCAGAAGGACCATGAGTTTCCAAGCCTAGGTCAGCTGTCCCTGTGGTGGCCATTGCCTCACTGGACATCTCTCAGTTTTCATAGTTAAGCCATGGAAACCTTCAAGGAAACGTCAGAGAAGCAGATGTGCTCCATGGCTGTCTTACGTGGTGCAGTCATTGAGGCCCAGAAAGGCTTGACGTGTCTTCTCACCTCAGAGATACCTAAGTGAATCTGATTTATCTGGGAATTCTTCACTATGTTAGCTGAACGTTAGCTGTTAGCCAACCTTTAGCGAAGGTGTTTACTACATTCTTGGTACTGTGCTGAGGACCTACATGGATCCCTTGAGTGGTGTGTTTTGATCTAGTTCTCAGTAGAGTTCTAAGGAGCTCCTGTTTGTTTCCATTTATTGATGAAGAACTGAGACAAAAGAAGAAACTTGCCCTTGATCACACAGCTCTTGAGCAGCTGTGTTCTGAAGCCCGCTTGTCTGCTGTAGAAGCCACGCTCCTTATCATCCTGAAATCCAAGAAACTGTGTCTCCACGGAATCTCTCTCCCAGAGTCCTACAAGCAAACACAGCTTTGCCACAGTGGCATGAGAGTAGCTGTTCAAAAAGATCAGAATAACCTTGGAACCATCATGATATGCTCTATTTGAGTAGAAATATGCTATTTGAGTATAAATATAGCTAAAATATGGTACTTGTAGAAGATTATATCAGTATTGTGTACTATCTCTCTAACTGCCCCACAATATAGCACTGTGCCTGGTCTTTGCTGGCTGCATGTATGGTTCTGCCATGTGTGGTTCTGCCATAGCCTTCTGTTAAGAATCATTGCCCTGGTTTGCCCAGTCCCCTTTCGTAGCATGCTTAATGCAAGTATTTGGTGCCTTGGAGAGATTTCGTGTGTGTGTGTGTGTGTTTGTATTCAGGTTAGCCTAACTGCTTTAAGATAGAAGTTAGTGTAAATTTATTGGTTTCATGTGTTTGGATGTTTACATTTTCCTTCACAGCATGAGTCCTTCTCTGTAAGTTAACTAACATACTTATTAAGCTTACAGGGAGCAGGGAGCTTACAGGCTTTTTAAATTCCAACTGGACACTACTTTCTTGCAACTTCTCTTTTCACTTAAATCATGTGAATTATCAAAAATGTATTTAGTTAAACCCAGAACAGAAGGGGAAAAGATTCTCTGGCCAACCAGGTTAGCCAATTTAATGAGCGCTGGGTTCAGTGAGAGAGACTGTTTCAAAAACTAAAGTGCTTACATAAAGGTGGGAAATGGCTGGTTGGATTGCTCAATGAGACGGGGTTTGCAATCAAGCCTGACTTGAATTGGATCCTCCAGGGCCCATAGGATAGGAGAGAGTCTTCTCCTGTAAGTTGTTCTCTGACCACCACAGGCACGTGTTTTCAGGCATACACTGCATACATACAACACAGACAGACAGACAGCTGCTGTGTGCACATACCTACACCCATATAACACAAACAGGTAGACAGACACATGATGATAGACAGATGATAGATGTACGTTTAGTAGAGAGCAACTGAGGAAGGCAACATGTGTGCATACACATGAATTCATAATAATATTCTATATACAAATAAAATCCTGTTTCATTTTTAAATCTCCTTTACTTTTACTTGTGTTTTGCTTGCAG
Seq C2 exon
CCCTTGCCAGAGTGGCCTCGCATCCCGGGACTTGTGCTCTCTGGAACCACATTTTCAGACTGTCTCATGGTGGTGCAGTTCTTACGAAACTTTGGTAAAGTTTTGGGCTTTGATGTGAATATTGATGTTCCAAACCTCAGTGTTCTTCAAGAGGGATTGCTAAATATAGGGGACAGCATGGGTGAAGTACAAGACTTGCTTGTGAGGCTCCTCTCAGCTGCTGTATGTGATCCAGGTCTAATTACAGGATACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000056984:ENSRNOT00000081302:18
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.681 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0279112=DDT=WD(100=74.1)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACGATTGAAGCAAGAGAAACGTG
R:
GAGGAGCCTCACAAGCAAGTC
Band lengths:
346-2064
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]