GgaINT0050416 @ galGal4
Intron Retention
Gene
ENSGALG00000012579 | BAZ2B
Description
bromodomain adjacent to zinc finger domain protein 2B [Source:RefSeq peptide;Acc:NP_990008]
Coordinates
chr7:36077116-36078805:-
Coord C1 exon
chr7:36078665-36078805
Coord A exon
chr7:36077371-36078664
Coord C2 exon
chr7:36077116-36077370
Length
1294 bp
Sequences
Splice sites
5' ss Seq
AAGGTAGTT
5' ss Score
6.44
3' ss Seq
TTTGTTTTTTCCTATTTCAGGCT
3' ss Score
10.65
Exon sequences
Seq C1 exon
GAAAAAGAGCGATTAAAGCAAGAGAAACGTGATGAAAAAAGGTTAAATAAAGAACGTAAACTAGAACAGCGAAGACTGGAACTAGAAATGGCAAAGGAGCTGAAGAAGCCTAATGAAGATATGTGCTTAGCAGACCAGAAG
Seq A exon
GTAGTTGTAATAGTTTAAAATGTACATAGGTTGCTCCAAAAGTAACGCTTCCTATTTATTACTTTGGAAACTGCAATAGATACAAAGAACACAACAACAGTATTTGTTAGAGGACATTCCCAGCTACAAAACACTGTTTTTCAGCATAGTCACCACCACTAGCTGTGTATTTTTGCCAGCAATGAACAAAAGCCTGCATGCTATGCTTGTAGAAATCGGTACCAGTGGAGGTGACGACCGTTGCCACTGCTGAAACTCACCACCTGCTGCCTCACTGTGCTCACATTTACTATGTGGGTTCCATAAATGTCCTAGCATTGATCAATATCAGTGGGTGCAGTTTTTTTCTGCATGGAGGAACTCAGTTGCACACCTTTGCTTCGTCCATACTTGCATGTCAGATGCCATCTTGTCAGACTACCTATCTGCTGCCATGTGTTACCCAGCAACAAAATGTAATGTAATATTGGTGGGAAAGGTTCAACTTCTACTCCATACCACCTACATCTGCCTTTGATGTCGTGGGCCAACATAATAATAGGAGGCATTAGTTTCGGAGCAGCCGTTGTATTTTCTTGCCTTATTTCTGTCTTCTGCCTTTGAGAAAATATCAGCTTTCCTTGCAGCCATTCCCAAAGCATTCAAGTGTTGATTTGGATAATTATATTACTATTTGAAGTACATAAATACAGTTTAAGACAACCTCTGAAGTGGTATTGATTTCCTTAGTTAAAACACATTTTTGCTTAAAGGTGGACTTCTTCCTGAAGTGTATTTGCGTAATTGATTTACATTAGTCTGAGTTGCTTTTGCATCAGGACCATGCCTCTTTTCTCAGAAAGTAGGCACTGAATAGAACTTTTCTCAAATGTGGAACTACAATAGGCCATTATTCCAAAATGCTGTTCTTCCAGGCTTCTGTGTTTTTAGTTCCTATCCTTCAGGACTTTACCTGTATGAAGTTCAAGTCCACCTTTCTGAGAATTACACTTCCTGCCGCTCTCAGAGATCTTCAGTACTACCTTCTATAATACTTAGGCTCCAAGTAGTGTCTGAAAGCCCCTCTTATCCAAGAAGTCTTAGTTAGTCTGTGCCCTTATAAAGTAAGTGAAAAAGATGAACATTAATTAAGGGTATTTCAGTATTATAGTAAACTTATGGATGGGGTGTGGGGGAGCAGCTCTTATATTGCCTTCACCTTCTATTGTTCATATGCTGTAGGTCATATGAAAGTACTAATAAAAAAGTTACCCTCTGAAATATGCTACTAAATCTTTGTTTTTTCCTATTTCAG
Seq C2 exon
GCTTTGCCAGAGCTGCCTCGCATCCCAGGCCTTGTTCTGTCTGGAAGCACATTTTCAGATTGTCTCATGATAGTACAGTTCTTGCGTAACTTTGGTAAAGTTCTTGGCTTTGACGTGAATACAGATGTGCCTTCCCTGAGTACTCTTCAAGAAGGTTTGCTGAACATAGGGGACAGCAGAGGAGAAGTACAGGACTTGCTTGTAAAGCTTGTCACTGCAGCTGTTTGTGATCCAGGACTTGTTACAGGATACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000012579:ENSGALT00000020542:20
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.702 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0279112=DDT=WD(100=74.1)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGCGATTAAAGCAAGAGAAACGTG
R:
ACAGCTGCAGTGACAAGCTTT
Band lengths:
358-1652
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]