DreINT0001848 @ danRer10
Intron Retention
Gene
ENSDARG00000082979 | BAZ2B (2 of 2)
Description
bromodomain adjacent to zinc finger domain, 2B [Source:HGNC Symbol;Acc:HGNC:963]
Coordinates
chr9:52400896-52403329:+
Coord C1 exon
chr9:52400896-52401036
Coord A exon
chr9:52401037-52403091
Coord C2 exon
chr9:52403092-52403329
Length
2055 bp
Sequences
Splice sites
5' ss Seq
AAGGTGAAC
5' ss Score
5.54
3' ss Seq
GTTTGTGTGTGTGTTTTCAGCCT
3' ss Score
8.33
Exon sequences
Seq C1 exon
GAGAAAGAGCGACTCAAACAGGAGAAACGAAACGAGAAACGACTGAACAAAGAGCGCAAACTGGAGCTCAGACGTCTGGAGCTGGAAATGGCCAAAGAGCTCAACAAACCCAATGAAGACCTGTGTCTGGCGGACCAGAAG
Seq A exon
GTGAACCACAGACGCCTTTCATTCATTCATTCATTCATTGATTCATTCTTTCATTTAGTCAGTTAGTCAGTCAGTCAGTCATTCCTCTTTTCGTTTATTCATTCACTAATTCATTCAGTCAGTCATTCTTTTTTTCATTCAGTCAGTCATCCATTAATTTGTCAATTAGTCAGTCAGTCAGTGATTCAGTTAATTTATTCATTTAGTCAGTCAGTCTGTCAATCATTTGTTCAGTCAGTCAGTCAGTCTGTCAGTACTTGTTCATTCATTCATTCATTCATTCATTCATTCATTCATTCATTCATTCAGTCCGTCAGTCAGTCAATCAGTCAGTCAGTCTCAATCCTTTGTTCAGTCAGTCAGTCAGTACTTATTCATTCATTCATTCATTCATTCATTCATTCATTCATTCATTCATTCATTCAGTCAGTCAGTCAGTCAGTCAGTCTGTCAGTACTTGTTCGTTCATTCATTCATTCATTAATTCAGTCAGTCGGTCAGTCAGTCAATCTGTCAGTTAGTCAGTCAGTCTCAATCCTTTGTTCAGTCAGTCAGTACTTGTTCATTCATTCATTCATTCATTCATTCATTCAGTCAGTCAGTCAGTCAATTCTTTGTTTATTTATTCAGTCATTCATCCAGTCAATCATTCATTCCCTCAATTAATCAATCATTCAGTTAGTCATTCATTCAATCAATCAGTCAGTAATTTATTAATTCAGTCAGTGATTCAATAATTCAATCAGTCAGTTATTCATTTATTTATTTATTAATTCCATCAGTCAGTCATTCTTTTGTTCATTTATTCATTCAGTCAATCGTTCATTTGTTCAACCACTCATTCAGTCAGTCATGCATTAATTTGTTTCAGTCAGTAATTCATTTGTTCATTCATTCAGTCAGTCAATCCTTTGTTCATTCATTCAGTCAGTTAGTCAGTCAGTCCTTCATTCAATCATTCATTCATCCATTTACTCAGTCAGTCAGTAATTCATTTGTTCATTCAGGCAGTCTGTCAATCCTTTGTTCATTCATTCAGTCAGTCAGGTCAAAAATTCAGTCAGTAATTAATTAATTAATTCGTTCATTCATTCATTCATTCATTCATTCAAGCAGTCGATCATTTATTCTCTCAATCAATCAATCAATCAATCATTCAGTTAGTCGTCCATTCATTCATTTAAATAATCAGTCAGTCAGTAATTCATTCATTCATTTAATCAGTCAGTCAGTCAGTAATTTATTTGTTAATTCAGTCAGTCTGTCAATCCTTTGTTCATTCATTCATTCAGTCAGTCGATCAGTCCTTCTTTCGTTCATTCATTCATTCATTCATTCATTCATTCATTCATTCAGTCACTCAGTCAGTCAGTATTTCATTCATTCATTCAAGCAGTCAATCATGTTTTCTCTCAATCAATCAATCACTCAGTTAGTCGTCTATTCATTAATTCAAATAATCAGTCAGTCAGTAATTCATTCATTCATTCATTTATTCTTTTATTCATTCATTCATTCATTCATTCATTCATTCATTCAGTGAATCATTGATTCAGTCAATCAATCAGTCAGTCAATTGTTCTTTCGTTCAATTATTCATTCAGTCATCCTATAATTAATTAAATAAATCAGTCAATAATTAATTCATTCATTCATTCATTCATTCATTTATTCAATTGTTCATTAATTAATTAATAAAATTGCTAAATAATGAATGAATGAATTCATTCATTTGTTCATTCAGTCATTTGATCTTTTTTTTTTTATTTGTTCATACAATATCTAACTCTATATTGTTTTACACATTGTTTGTGTCTAATATATGTGTTTTGTGCCAAGTTGCTGTGTTAATAAGCAGGAAAAAAGATATGCAAAGTACCTCCATCCATTCAGTGTTATACAATAGTGCTCTGCTTTGCGTTGGGCTGCGATTAACGTTTTGGACTTTATTCTGTGATAATCTCCTGTATCTACTTTACCCCTAGCATATTACCCTGCTCTTCTTGAGTGTATAAGTCTGTCTCTGTGTGTGTGTGTTTGTGTGTGTGTTTTCAG
Seq C2 exon
CCTCTGCCGGCTCTGTCCCGCATCCCTGGTCTGCTGCTGCCGGGTGGATGTTTCTCAGACTGTCTGATGGTTCTGCAGTTCCTGCGGTGTTTTGGGAAGGTCCTGGGGTTTGACCAGAGCGCTGACGTGCCATCGCTCGCTGTGCTTCAGTCTGGCCTGCTGAATGTGGGCGACAGCACGGGCTTCATCCAGGACCTGCTGGTGCGTTTGCTGTCTGCTGCTGTCTGTGACCCAGGAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000082979:ENSDART00000097149:25
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.362 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0279112=DDT=WD(100=81.2)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]