GgaINT0050416 @ galGal3
Intron Retention
Gene
ENSGALG00000012579 | BAZ2B
Description
NA
Coordinates
chr7:38213453-38215142:-
Coord C1 exon
chr7:38215002-38215142
Coord A exon
chr7:38213708-38215001
Coord C2 exon
chr7:38213453-38213707
Length
1294 bp
Sequences
Splice sites
5' ss Seq
AAGGTAGTT
5' ss Score
6.44
3' ss Seq
TTTGTTTTTTCCTATTTCAGGCT
3' ss Score
10.65
Exon sequences
Seq C1 exon
GAAAAAGAGCGATTAAAGCAAGAGAAACGTGATGAAAAAAGGTTAAATAAAGAACGTAAACTAGAACAGCGAAGACTGGAACTAGAAATGGCAAAGGAGCTGAAGAAGCCTAATGAAGATATGTGCTTAGCAGACCAGAAG
Seq A exon
GTAGTTGTAATAGTTTAAAATGTACATAGGTTGCTCCAAAAGTAACGCTTCCTATTTATTACTTTGGAAACTGCAATAGATACAAAGAACACAACAACAGTATTTGTTAGAGGACATTCCCAGCTACAAAACACTGTTTTTCAGCATAGTCACCACCACTAGCTGTGTATTTTTGCCAGCAATGAACAAAAGCCTGCATGCTATGCTTGTAGAAATCGGTACCAGTGGAGGTGACGACCGTTGCCACTGCTGAAACTCACCACCTGCTGCCTCACTGTGCTCACATTTACTATGTGGGTTCCATAAATGTCCTAGCATTGATCAATATCAGTGGGTGCAGTTTTTTTCTGCATGGAGGAACTCAGTTGCACACCTTTGCTTCGTCCATACTTGCATGTCAGATGCCATCTTGTCAGACTACCTATCTGCTGCCATGTGTTACCCAGCAACAAAATGTAATGTAATATTGGTGGGAAAGGTTCAACTTCTACTCCATACCACCTACATCTGCCTTTGATGTCGTGGGCCAACATAATAATAGGAGGCATTAGTTTCGGAGCAGCCGTTGTATTTTCTTGCCTTATTTCTGTCTTCTGCCTTTGAGAAAATATCAGCTTTCCTTGCAGCCATTCCCAAAGCATTCAAGTGTTGATTTGGATAATTATATTACTATTTGAAGTACATAAATACAGTTTAAGACAACCTCTGAAGTGGTATTGATTTCCTTAGTTAAAACACATTTTTGCTTAAAGGTGGACTTCTTCCTGAAGTGTATTTGCGTAATTGATTTACATTAGTCTGAGTTGCTTTTGCATCAGGACCATGCCTCTTTTCTCAGAAAGTAGGCACTGAATAGAACTTTTCTCAAATGTGGAACTACAATAGGCCATTATTCCAAAATGCTGTTCTTCCAGGCTTCTGTGTTTTTAGTTCCTATCCTTCAGGACTTTACCTGTATGAAGTTCAAGTCCACCTTTCTGAGAATTACACTTCCTGCCGCTCTCAGAGATCTTCAGTACTACCTTCTATAATACTTAGGCTCCAAGTAGTGTCTGAAAGCCCCTCTTATCCAAGAAGTCTTAGTTAGTCTGTGCCCTTATAAAGTAAGTGAAAAAGATGAACATTAATTAAGGGTATTTCAGTATTATAGTAAACTTATGGATGGGGTGTGGGGGAGCAGCTCTTATATTGCCTTCACCTTCTATTGTTCATATGCTGTAGGTCATATGAAAGTACTAATAAAAAAGTTACCCTCTGAAATATGCTACTAAATCTTTGTTTTTTCCTATTTCAG
Seq C2 exon
GCTTTGCCAGAGCTGCCTCGCATCCCAGGCCTTGTTCTGTCTGGAAGCACATTTTCAGATTGTCTCATGATAGTACAGTTCTTGCGTAACTTTGGTAAAGTTCTTGGCTTTGACGTGAATACAGATGTGCCTTCCCTGAGTACTCTTCAAGAAGGTTTGCTGAACATAGGGGACAGCAGAGGAGAAGTACAGGACTTGCTTGTAAAGCTTGTCACTGCAGCTGTTTGTGATCCAGGACTTGTTACAGGATACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000012579:ENSGALT00000037699:19
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.698 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0279112=DDT=WD(100=74.1)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGCGATTAAAGCAAGAGAAACGTG
R:
ACAGCTGCAGTGACAAGCTTT
Band lengths:
358-1652
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]