HsaINT0022022 @ hg19
Intron Retention
Gene
ENSG00000180999 | C1orf105
Description
chromosome 1 open reading frame 105 [Source:HGNC Symbol;Acc:29591]
Coordinates
chr1:172431318-172434503:+
Coord C1 exon
chr1:172431318-172431385
Coord A exon
chr1:172431386-172434438
Coord C2 exon
chr1:172434439-172434503
Length
3053 bp
Sequences
Splice sites
5' ss Seq
TAGGTAAGT
5' ss Score
9.66
3' ss Seq
TTCTTGTTTCTTCCAATCAGAAT
3' ss Score
8.74
Exon sequences
Seq C1 exon
GTACAACCAAGAACAATGAAAATCCCAGATGATCCAAAAGCATCCTTTGAGAATTGTATGAGTTATAG
Seq A exon
GTAAGTCAACAATTTAAATCAGGACATGACTTAATTCTTGTTATGTCTGAGGACACAGGAGAGTGGATTGAGAAGCCTAGTAAGAGGAATGTTTAAGGAATGCTTAGGGAACAGGCTTCTTGACTGGTTTTATTTTTAGGTTAAACCAAATTATTAGATCAAAAAAGAAAGTTCACCTTTTTGCTTGAACAACTACTGAAACTATTGTAGAAAGTATAATCTTCCTTTCCACCTTCACAAGAACAATATAAGAAACAGAATAGGAAATTTCTTTGATAATTCAGATGGAACTAAATACAAATTCTCCATGTAGATGACATATCTAATCTGCAAGATATGGGGGATTACACATAATCTTTCCTTAGTCCAAGATGTTCTCTGCTACGTTTTAGTAACTAAAATTCCTCTTTATCAGTTTGTTTGGTTGTTATTTAAAGCTTTTTTTAAATCAAGATCGAGTATAACAGATATAAAATCCAATTGGAATTATGATTAGTTTTTTTGTGTGTTTTGTTTTGTTTGGTTTGGTTTGGTTTTTTCTTTTTGAGATGGAGTCTCTCTCTGTTGCCCAGGCTGCAGTGCAGTGGCGCAATCTTGGCTCACTGCAACCTCCACCTCCCAGGTTCAAGCAATTCTCTTGCCTCAACTTCCCAAATAGCTGCGATTACAGATGTCCACCACCATGCCTGGCTAATTTTTTTTTTTCTTCTTAGTGGAAATGTGATTTCACCATGTTGGCCAGGCTGGTCTCAAACTCCCCACCTCTGGTGATCTGCCCGCCTCGGCCTCCCAAATTGCTGTGATTACAGGTGTGAGCCACCATGCCCCACCTAGTTTTTCAAAGAGTTTTTTTCTTCTATATTTAACTACTAGGCAGGGAAGAAGGACTCTGTTTTTACTTTATTACAACATGCAAAACATGGACTCATTCTAAACAGGACATCAACACAGGTCAACTTGCATTGCAATAGATGGTTGGAAAGTAGACATACACTCACCTTTACATATGACTAACCAAAAAAGCTATATGTAATCTAATGCCCATTTTAATTTTTTCCTCATACAGTCAGCAATAATGTGGAAAAATAAATAGGTTTTTCTGTAACCTTATGTTGCACAATGGTACATGTCCTGATTCCTTTTATGACCTTAGGGCCATTTGTTCCAGACTCAAATATAGACCCAGATACACTGAAAACATGCACCCAGTTCCTGGCCAAGGTAGACAAAGTTATGGAGGAAGTGGCTATTTGAGCAGTACAAGCTCCATCACTAATAACATTTACCTGTACTGACTCTACATTTTTAAAGAGCTCTTATATGATAAAAGTAATTCTAGTAAATATTCATTATGAACTTTAAATGGAAAACTGAAGCATCTAAAATCAGAGATTTCTGAGCAAAATTTCACCCTTCTGTGAAATAACCTTTCGAAATTTGTTGCCCCATTTTACTTATCTTGCAAGTTTTGTACTTTATTTAAATACAAAATTCCAGAACATTAATTAGTTGTATTTTAAACAAATAGCTCTTATCCCTTTAAAAGTAAGACCAAGGATTAAACCAGTTCTAAAATCATGTCAACATCAACCAGACGTATCATGAGATTGATTGTTGTATTCTGTTTTTCAGTGTTATGGAGGAAAACATACCACTTCTGTGTGAGACTTAGCTAGAGTGACTATAAAGCAAGGGCCTGGTTCTACCTCTAACTTTTCCAAATTTGTTTCTAGCACTAGATATTGGTTTCTGTTTTCATACTTTTTAAGTATCACTGCATATATAGGCAAATGGAATTATCTTCACTGAAATTGTGGTTTTTTAAAAAGTGACTTTAATTATAGCCATTGCAGGAATTAAAATATAATACTTATTGAATGAAAAGAATGAAGGAAAAAAGGAAGAGAGGGAGAAAAGATGCAGGATAGATACATATTTGTTGAATTGTAGAATAGACAGAGCTTAAACTATTCAGTCCTGAACATACCATCTGCCTGTTTGCACAAAATGGATAATAGAAGGGGTTTTGCTTTCTCTTTTTCTCAATCTCAGTGACAATTGATTAAAGCAAACTGGCTTAACTCACTATATTTTTGGTAGCAAAGCAAAAATAATCTCGGAAGATCTTTGTGGAAGCAGAAACCATGAAATGAATGTAGAGCCTTAGATGGCCCATCAAAGTTTACAAATATGTCAGTCTTTAGAAATTAAGCAATTTAAACTAATGTAGAAGAGGTTTTGGCTTATATGCATTTTCCTCAAGGGTCACCTCCACAGCCTTGGCCACCAGGAGAAATAGGATGTGGTCAGGGCATTTTCTGTGAAATGGGAAGGTTCTAACCAAAATGTTTTCTCAGCTTTACTCTTTAAAGGTAGATTATTGATCTGGAAGAGTTCTGTTTTTTTTTTTTTTCTGGAAATTGAAGAACTCTTTCCTTTATTCCTCCTATTTTCAGACCACATATGTTCTGACAGTGGAATAAAACATTCAAAATGAAGGTTTTATCAAAAATCCATGAAAACAACACTAATCAAAAAGAGATTGAGAATTAGTAGTCCTTGGATCAATCATCTTACATTGCTAGAAAGTGGCCTTATCATCAGGTTAACCGGTAGTAGATTCAAGAGATTACGTGTGTTTAAAAATGTATAAAGAGGCCAGTGCGGTGGCTCACACTTGTAATCCCAGCACTTTGGGAGGCTGAGGCGGGCAGATCACCTGCAGTCAGGAGTTTTAGACCAGCCTGGCCAACATGGTGAAACCCCATCTCTACTGAAAATACTAAAATTAGCCAGGTGTGGTGGTGTGTGCCTGTAATCCCAACTACTCAGGAGGCTGAGGCAGGAGAACCACTTGAACCCGGGAGGCAGAGGTTGCACTGAGCCGAGATCGCACCACTGCACTCCAGCCTGGGCAACAAGCGCAAAAACTCCATCTCAATAATAATAATAAATAATAATAAATAAATAAAAATAAAAATGTATAAAGGCACATTTCTTTCTACCAAGCCCTAGCCAATTGACTAATGTGTTTTCTTGTTTCTTCCAATCAG
Seq C2 exon
AATGAGTCTTCATCAACCCAAATTCCAGACTACACCTGAGCCTTTCCATGATGACATCCCAACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000180999-C1orf105:NM_139240:5
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.453 A=NA C2=0.594
Domain overlap (PFAM):
C1:
PF150811=DUF4548=FE(13.3=100)
A:
NA
C2:
PF150811=DUF4548=FE(13.3=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)