RnoINT0121828 @ rn6
Intron Retention
Gene
ENSRNOG00000026523 | RGD1309106
Description
similar to hypothetical protein [Source:RGD Symbol;Acc:1309106]
Coordinates
chr13:79869532-79872407:-
Coord C1 exon
chr13:79872340-79872407
Coord A exon
chr13:79869591-79872339
Coord C2 exon
chr13:79869532-79869590
Length
2749 bp
Sequences
Splice sites
5' ss Seq
CGGGTGAGT
5' ss Score
9.89
3' ss Seq
TCTCTTGATTCTTCCATCAGCGA
3' ss Score
6.4
Exon sequences
Seq C1 exon
TTACAGCCAAAAATTTTCAAAATACCTGACCATCGGGAACCATCCCCCCAGAATTCTGTGAATCACGG
Seq A exon
GTGAGTCAAAGATGTAAAGTGGTCTATGAAGTAGGTTCTGGTTCTAACTCTTTGGGACACAGGATGGGGACTGAAAGGATAGTAAACAGAACACCCACAGGATGAACTTCATAGTGGTTTTATCTTCTGTTGAAATGAAGGAATCACATTAATTGAAGTTATTTCATTTCTTTACATGAATGACTAAGTTACTATTAGCACAACCTTCCTTTCCACCAGTTTAAGAACAGTCCATGGAGTAGGGGAGGAAGTTTCTTCATTGTCCTCAGGCAGATAACAATTCTCCTGTAGATGACATATGTCTAATTTACAAAATATGAGTGATAGTACACAACTTGTCCCGAATTCCAGGCATCCTCTATCACCTTCCATCAACTCAAATTCTATGTATCTCTTCAATTGTCATTTGCTGCAACGCAACAGAAATAGAACAGAATACAACCAATACCACGAAAGTAAAATCTAGTCAAGTTCTGGTTACTGAGGTTTTTGTCCTTTATCCTGTGCTGACTATTAACAGTAAAGAATTTACTTCTTACTTTATTTTTTAAAACTCTAGGAAGAACATGGAAGGAGTTGGGGGCATCCGCATGCATGTGTGAGTGAGTGTGTGCATGCAAATATAATGTTCTCATTATGAAAACTTCAACTAAAAAATAAACCTCCAGGCCCAGAAACGATGCTATCCATGTATGAAAACATCATAATGAAACTCATTGTTTTCTAACTAAAGCAAAGCAATAGCAACAGCAAACGTGGACTCATTCCGGCTAAGGCGTCAACGTTAGGAAGGCCTGTGACAGACAGTGAACTCTGAGCAGAGTCACCTTCGCAAAGGAGTCACATAGGATCCGAAAGCAACAATTAATTCTCTCCCTTATATGAAGAGAAAGGTGGGAGAAGCCAATCAGTCTTCTGCAATCCTATGTGGCTTGGAAGCAAGTGTTCTTTCTGATTGCTTTTACAACACCTCAGCCTTTTGCTCCAGACTACAACCAGTCACACTGACACCATGTACCAGTGCTGGCTCAGGTACACAAAGGTCATGAAGAAAACACGTGTCCCAGCAGTCCAAGTTCCAACACTTAGTAGCATTTACTCATACTTTTTTTATCATAATAAAGTATTCTGATAAATATTCTTTGCGAACTTTAAATAGGAAACTCTTTGAGTCAAGGCTTTCTGAGCAAAACTGGATTCTTCTGTGAAAGAGACTTTGAAACCTCTTACCCTGGTTTATTTAGAATGTTTTGTACTTTGAGTAAAGCACTTACTCCCCCAAATCATTAATTGCAAATCCTTCCTGTTCCTTTAAACTGTGGCTAATAATTGATTGATCTTAAAATTCTCCCAAACTTTTGTTTTTTGTTTCGTTTTCAACATAATGAAAGAAAGCCTACCACTTATATTTGATATCTCCTTAGAGTGACTGTAAAATATGGAATTGGCTCCATTTGTTGCTTATAAAATCTTCTCTACACTTTTTAACTCTCTCCACACATACGGCCAATGACAATGTCCCCATTGAAACAATTCCCTTTCTCCTATTAAAAAGATGTATTTTATCTTCATTTTTGTGTATGTCATGGGTGGGGGTGTACCTGCAGAGGCCGAAAAGGCATCAGATGAAGTTACAGGCAGCTGTGAGCCCAACATAAGAGTAAGGAACTGAACTCAGGTCCTCTGGAAGAAACAGACCTTCTTAATCACCAAGCCTTCTCCAAAGTCCTCCTGCTTCTAAGTGATTTTTAACTATAGCCACCACAAGAGCTAATAGTTTATGAATGTAAGGAATGAAGGAGAGAGGATGAGAGAAAGGATGGGGTCACACATACTTATTTGTAGAATTGTAGAACACAGATCATAAACTATTCATTCCTGAAAATACTGCCAATCATTTGCACAGCATTGACAGTGGATCAGTTTTGCTTCCTCTTTTCTCCACCTCAATGTGACTTCCAGTGACAAGTGGATTAAACTTGTCTAGACAGCCATATATTTTGGTAACAAAGCAACCTTAGATCTTTTTGGAAGTGGGCATATTAAAATGTGTAGATAGTCCTTCAGTGGTTCTCAACCTTCCAAATGCTATGGCCCTTTAATACAGTGCCTCAGGTTGTGGTGACCCCCAACCATAACATTAATTCATTTTACTACTGTTATGAATTGTAGTGGAAATATCTAATACGCAGGATATCTGATATGCCATCCCCAAAGGGGTCATGACCCATAGGTTAAGAAACATTGCTAACTAGTTCATCAAATGGTAACAAATTGTAAGTCTTAAGGAATTGAGCAGTTCAGATCAACCTAGAATGTTTTGGGATTGAATGTATTTGGAGTGAGGGTCACCCCCACAGCCTTGACAGAAGGGAGGCATGGAGATGTCACAAAGTCTCTAACCAAAACATTTTCTCAGTTTTGCTTTTCAGGGGCAAATTGACTGACTTAGAAGATTTCTTACATTTTATGAAAATTAAAGAAATATTTTCTTAATCTTTACTAGTTTTAGACTCTACATGTTCTTATAGTAGAATAAAATATGTTTAAATAATGGTTTTATCAAAACTCATGAGGATATTACTGAGGAAAAGCACCTGAAACTTAGTGGTATTTGAACTCTCTCACCCTGCTGCAGCCTGCTGCAAGGCCACAGGGCAGCTCACCCCCACTGTCTGTGTAAAGACCCAGTCCTTTTTTACCAGGCTCTAACCAACTGATGCATGCACTCTCTTGATTCTTCCATCAG
Seq C2 exon
CGAGGTGAGCCTTCATTCGCAAGAGCAGCAGTTACATGCCTGCAATGATATTCCAACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000026523:ENSRNOT00000035815:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.783 A=NA C2=0.238
Domain overlap (PFAM):
C1:
PF150811=DUF4548=FE(13.3=100)
A:
NA
C2:
PF150811=DUF4548=FE(12.1=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]