MmuINT1002003 @ mm10
Intron Retention
Gene
ENSMUSG00000086277 | 4930558K02Rik
Description
RIKEN cDNA 4930558K02 gene [Source:MGI Symbol;Acc:MGI:1922618]
Coordinates
chr1:161949584-161952667:-
Coord C1 exon
chr1:161952600-161952667
Coord A exon
chr1:161949643-161952599
Coord C2 exon
chr1:161949584-161949642
Length
2957 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGT
5' ss Score
10.67
3' ss Seq
TCTCTTGATTCTTCCATCAGAGA
3' ss Score
7.1
Exon sequences
Seq C1 exon
GTACAGCCAAAAACTTTCATAATACCTGACCATCAGAAACCACCCTCCCAGAATTCTGTGAATCACAG
Seq A exon
GTGAGTCAAAGACATAAACTGGGCTATAACATAAGTTCTGATTCTAACTCTTTGGGACACAGGATTAGGACTGAAAGGACAGTAAACAAAACACCCAGAGGGTGAAATTCATAGTGCTTTTATCTTCTGTTGAAATGGAGTCATGCTTCATAAAGAAGTTACTTCACTTCTGTACATGAATGACTATTAAGTTACTATTAGCACAACCTTCCTTTCCACCAATGTAACGACAGTCCAAGGAGTAGGGGAGGAAATTTCTTCCTCACCCTCTGGCAGATAACCATTCTCCTGTAGATGATATATCTCTGATTCACAACATATGAGTGACAGCACATGATTTCCTGACTTCCAGGCATCCTCTGTCACCTACCAGCAGCTCAAATTCTGTTTATCCTTTTGATTGTCGTTTGCAGCAGTGCAACAGAAAAATAACACAATAACCACAGGAGGAGAGTCTAGTCAAATCGCAGGTAGCGAGGTTTTTGAACCTTTTTCCTGTGTTTGTTTATTAGCCATAAAGAATTTACTTCTTATTTTATCTTTTAAAACTCTAGGAAGAGCATGGAAGGAGTTGAGGGCATGGGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGCAAATGTTCTCATTATGAAAACTTCAATTAAAAAAAAAACCCAGACCCAACTATGATGCTATGCATGTATGAAAAAAAATCATAAGAAAACTCATTGTTTTGTAACTAAAGCAACAACAATAAGAACAAATATGGACTTGTGCTGGCTCAGGCATCAATATTCTGAAAGCCTTATGATAGACTATGGAATGCGAGCATAGAGTCACCTTCACAAAGGAGTTATATAGGGCCCCAAGGCAACATTTAATTCTCTCCCTTATATATAGAGAAAGATGGGAGAAGCTAATTGGTCTTTCTGTAATCCTATGTGGCTCAGAAGCAAGTGTTCTGATTGCTTTTACAACATCACAGCCTTTTGTTCCAGACTACAACACAGTCTGGTGCACTGACACCGTGTACCAGTGCTGGCTTGGGTACACAAAGGTCATGGAGGAAACACGTGTCCTAGCAGTCCAAGTTCCAACACTAATAACATTTACTCATACTTTTTTATCATGATAAAAGTAATTCTGATAAATACTCTTTGCAAACTTTAAATAGGAACCTCTTTGAATCAATGCTTTCTGAGCAAAAGTAGATTCTTCTGTGACAGAGACTTTGAAACCTGTTACCCTGGTCTATTTAGAAAGTTTTGCACTTTGAGTAAAGCACTTAATCCCCAAATCATTCATTGCTTTTATTTTAAGCAAATCTTTCCTGTTCCTTTAAACTGTGGCTAAAAATTGATTGATCTTAAAATTCTCCCAAACCTTTGGTTTTGGTTTCATTTTCAATGTAATGAAAGAAAGCCTACCACTTCCATTTGATACCTCCTTAGAGTGTTTGTTCTGTTTGATACCTCCTTCGAGAGACTGTAAAATATGGACTTGGCTCTGTTTGCTGCTTATAAAATCTCTACACTCTTTAACTGTCACCACACATATAGCCAATGACACTGTCCCCGTCGAAACAATTCCCTTTCCCCTATTAAAAATAGATATATTTTATCTTCATTTTTGTGTATGTCATGGGGGGTGGGGGGTTGCACCTGCAGAGATGAAAAAGTCTTGGGATAGTCTGGGACTGAAGTTATGTGAGCCCAGCATAAGAACAGGGACCTGAACTCGGGTCCTCTGGAAGAAGCAAGCCTTCTTAATCACCAAACCTTCTTCCCAGCCCTCCTGCTTCTAAGTGACCTTAACTGGAGCCACCACAAGAGCTAATAGTTTATGAATGTAAGGAATGAAGGAGAGAGGAAGACAGAAAGGGTGGAGACACATATTCTTATGTGTTGAATGGTAGAACACACTGCTCTTAAACTATTCATTCCTAAAAATACTGCCGATTGCGTGCACAGTATGGACAATGGATGGATTTTGCGTCCTTTTGACTATACCTCAGTGAGGCCTCCAGTGACAATTAAATTAAAGCTTGTCTAGACCAGCCATATATTTTGGTAACAAGGCAACCTCAGAAGATCTTTTTAGAAGTGGGCACATTAAAATGTAGAGCTAGCCTTCTACATTGGTTCTCAGCCTTCCAAATGCTATGGCCCTTTAATACAGTTCCTCGGGTTGTGGTGACCTACAAGCATAAAATTAATTCATTTTACTACTGTTATGAATTGTAGTGGAAATGTCTAATATGCAGGATATCTGATATGCCATCTACAAAGGGGTCATGACCCATAGGTTAAGAAACATTGCTGGCAAGTTCATCACATAGTAACAAATTGTAAGTCTTGAGGAATTAAGCAGTTTAGCTGAATCTAGGATGTTTTGGAATTGAATGTATTTGGAGTAAGGGTCACCCCCACAGCCTTGCTGGAACAGAGGAATGGAAACATCACAAAGTCTCTAACTAAAATGTTTCCTTAGTTTTGATTTTCAAGGGTAAATTGACTGACTTGGAAGTTTTCTTACTTTTTATGAAAATTAAATATTTCCAGCTGGGCAGTGGTGGCACATGCCTCTAATCCCAGCACTTGGGAGGCAGAGGCAGGCGAATTTCTGAGTTTGAGACCAGTCTAGTCTACAGAGTGAGTTACAGGACAGCCAGGGCTATACAGAGAAACCCAGTCTCAAAAAAAACCAAAAGAAAAAAATTCCTAAATCCTTACTAGTTTTAGACTCTACATGTTCTTATAGTAGAATAATATGTTTAAATAAAGGTTTTATCAAAACTCACGAGGGTACTACTGAGGAAAAGCTGCTGAGAGTAAATGGTGTTTGGACAGTTTAGTCTTTCGCCCTGGTGCAAGGCCACTGTGCAGCTACCCTGCTCTCTGTATAAAGACCCAATCCTCTTTCACTAGACTCTAACCAACTGATGCATGTGTTCTCTTGATTCTTCCATCAG
Seq C2 exon
AGAGGTGAGCCTTCATTCGCAAGTGCAGCAGTTAAACTCCTACAATGATATTCCAACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000086277:ENSMUST00000162676:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.848 A=NA C2=0.571
Domain overlap (PFAM):
C1:
PF150811=DUF4548=FE(13.3=100)
A:
NA
C2:
PF150811=DUF4548=FE(12.1=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types