HsaINT0022022 @ hg38
Intron Retention
Gene
ENSG00000180999 | C1orf105
Description
chromosome 1 open reading frame 105 [Source:HGNC Symbol;Acc:HGNC:29591]
Coordinates
chr1:172462178-172465363:+
Coord C1 exon
chr1:172462178-172462245
Coord A exon
chr1:172462246-172465298
Coord C2 exon
chr1:172465299-172465363
Length
3053 bp
Sequences
Splice sites
5' ss Seq
TAGGTAAGT
5' ss Score
9.66
3' ss Seq
TTCTTGTTTCTTCCAATCAGAAT
3' ss Score
8.74
Exon sequences
Seq C1 exon
GTACAACCAAGAACAATGAAAATCCCAGATGATCCAAAAGCATCCTTTGAGAATTGTATGAGTTATAG
Seq A exon
GTAAGTCAACAATTTAAATCAGGACATGACTTAATTCTTGTTATGTCTGAGGACACAGGAGAGTGGATTGAGAAGCCTAGTAAGAGGAATGTTTAAGGAATGCTTAGGGAACAGGCTTCTTGACTGGTTTTATTTTTAGGTTAAACCAAATTATTAGATCAAAAAAGAAAGTTCACCTTTTTGCTTGAACAACTACTGAAACTATTGTAGAAAGTATAATCTTCCTTTCCACCTTCACAAGAACAATATAAGAAACAGAATAGGAAATTTCTTTGATAATTCAGATGGAACTAAATACAAATTCTCCATGTAGATGACATATCTAATCTGCAAGATATGGGGGATTACACATAATCTTTCCTTAGTCCAAGATGTTCTCTGCTACGTTTTAGTAACTAAAATTCCTCTTTATCAGTTTGTTTGGTTGTTATTTAAAGCTTTTTTTAAATCAAGATCGAGTATAACAGATATAAAATCCAATTGGAATTATGATTAGTTTTTTTGTGTGTTTTGTTTTGTTTGGTTTGGTTTGGTTTTTTCTTTTTGAGATGGAGTCTCTCTCTGTTGCCCAGGCTGCAGTGCAGTGGCGCAATCTTGGCTCACTGCAACCTCCACCTCCCAGGTTCAAGCAATTCTCTTGCCTCAACTTCCCAAATAGCTGCGATTACAGATGTCCACCACCATGCCTGGCTAATTTTTTTTTTTCTTCTTAGTGGAAATGTGATTTCACCATGTTGGCCAGGCTGGTCTCAAACTCCCCACCTCTGGTGATCTGCCCGCCTCGGCCTCCCAAATTGCTGTGATTACAGGTGTGAGCCACCATGCCCCACCTAGTTTTTCAAAGAGTTTTTTTCTTCTATATTTAACTACTAGGCAGGGAAGAAGGACTCTGTTTTTACTTTATTACAACATGCAAAACATGGACTCATTCTAAACAGGACATCAACACAGGTCAACTTGCATTGCAATAGATGGTTGGAAAGTAGACATACACTCACCTTTACATATGACTAACCAAAAAAGCTATATGTAATCTAATGCCCATTTTAATTTTTTCCTCATACAGTCAGCAATAATGTGGAAAAATAAATAGGTTTTTCTGTAACCTTATGTTGCACAATGGTACATGTCCTGATTCCTTTTATGACCTTAGGGCCATTTGTTCCAGACTCAAATATAGACCCAGATACACTGAAAACATGCACCCAGTTCCTGGCCAAGGTAGACAAAGTTATGGAGGAAGTGGCTATTTGAGCAGTACAAGCTCCATCACTAATAACATTTACCTGTACTGACTCTACATTTTTAAAGAGCTCTTATATGATAAAAGTAATTCTAGTAAATATTCATTATGAACTTTAAATGGAAAACTGAAGCATCTAAAATCAGAGATTTCTGAGCAAAATTTCACCCTTCTGTGAAATAACCTTTCGAAATTTGTTGCCCCATTTTACTTATCTTGCAAGTTTTGTACTTTATTTAAATACAAAATTCCAGAACATTAATTAGTTGTATTTTAAACAAATAGCTCTTATCCCTTTAAAAGTAAGACCAAGGATTAAACCAGTTCTAAAATCATGTCAACATCAACCAGACGTATCATGAGATTGATTGTTGTATTCTGTTTTTCAGTGTTATGGAGGAAAACATACCACTTCTGTGTGAGACTTAGCTAGAGTGACTATAAAGCAAGGGCCTGGTTCTACCTCTAACTTTTCCAAATTTGTTTCTAGCACTAGATATTGGTTTCTGTTTTCATACTTTTTAAGTATCACTGCATATATAGGCAAATGGAATTATCTTCACTGAAATTGTGGTTTTTTAAAAAGTGACTTTAATTATAGCCATTGCAGGAATTAAAATATAATACTTATTGAATGAAAAGAATGAAGGAAAAAAGGAAGAGAGGGAGAAAAGATGCAGGATAGATACATATTTGTTGAATTGTAGAATAGACAGAGCTTAAACTATTCAGTCCTGAACATACCATCTGCCTGTTTGCACAAAATGGATAATAGAAGGGGTTTTGCTTTCTCTTTTTCTCAATCTCAGTGACAATTGATTAAAGCAAACTGGCTTAACTCACTATATTTTTGGTAGCAAAGCAAAAATAATCTCGGAAGATCTTTGTGGAAGCAGAAACCATGAAATGAATGTAGAGCCTTAGATGGCCCATCAAAGTTTACAAATATGTCAGTCTTTAGAAATTAAGCAATTTAAACTAATGTAGAAGAGGTTTTGGCTTATATGCATTTTCCTCAAGGGTCACCTCCACAGCCTTGGCCACCAGGAGAAATAGGATGTGGTCAGGGCATTTTCTGTGAAATGGGAAGGTTCTAACCAAAATGTTTTCTCAGCTTTACTCTTTAAAGGTAGATTATTGATCTGGAAGAGTTCTGTTTTTTTTTTTTTTCTGGAAATTGAAGAACTCTTTCCTTTATTCCTCCTATTTTCAGACCACATATGTTCTGACAGTGGAATAAAACATTCAAAATGAAGGTTTTATCAAAAATCCATGAAAACAACACTAATCAAAAAGAGATTGAGAATTAGTAGTCCTTGGATCAATCATCTTACATTGCTAGAAAGTGGCCTTATCATCAGGTTAACCGGTAGTAGATTCAAGAGATTACGTGTGTTTAAAAATGTATAAAGAGGCCAGTGCGGTGGCTCACACTTGTAATCCCAGCACTTTGGGAGGCTGAGGCGGGCAGATCACCTGCAGTCAGGAGTTTTAGACCAGCCTGGCCAACATGGTGAAACCCCATCTCTACTGAAAATACTAAAATTAGCCAGGTGTGGTGGTGTGTGCCTGTAATCCCAACTACTCAGGAGGCTGAGGCAGGAGAACCACTTGAACCCGGGAGGCAGAGGTTGCACTGAGCCGAGATCGCACCACTGCACTCCAGCCTGGGCAACAAGCGCAAAAACTCCATCTCAATAATAATAATAAATAATAATAAATAAATAAAAATAAAAATGTATAAAGGCACATTTCTTTCTACCAAGCCCTAGCCAATTGACTAATGTGTTTTCTTGTTTCTTCCAATCAG
Seq C2 exon
AATGAGTCTTCATCAACCCAAATTCCAGACTACACCTGAGCCTTTCCATGATGACATCCCAACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000180999:ENST00000367727:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.435 A=NA C2=0.522
Domain overlap (PFAM):
C1:
PF150811=DUF4548=FE(13.2=100)
A:
NA
C2:
PF150811=DUF4548=FE(13.2=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development