HsaINT0026473 @ hg38
Intron Retention
Gene
ENSG00000157445 | CACNA2D3
Description
calcium voltage-gated channel auxiliary subunit alpha2delta 3 [Source:HGNC Symbol;Acc:HGNC:15460]
Coordinates
chr3:54837159-54838648:+
Coord C1 exon
chr3:54837159-54837230
Coord A exon
chr3:54837231-54838567
Coord C2 exon
chr3:54838568-54838648
Length
1337 bp
Sequences
Splice sites
5' ss Seq
ACCGTGAGT
5' ss Score
9.4
3' ss Seq
TCAATGTTTATTTTCGACAGAGA
3' ss Score
5.71
Exon sequences
Seq C1 exon
CTGACTGATGATCAGGGCCCCGTCCTGATGACCACTGTAGCCATGCCTGTGTTTAGTAAGCAGAACGAAACC
Seq A exon
GTGAGTACAGTCGCTGAGCTTCCTGCTTGATGCTAGGAGGGTGGTTTTCTCAGACCCCCTCTGACTCCAGCTCTGGTGACTTTTGATTTTTAAGCATAGGATGTATGTCATTTTTCCTTATTGTTTGATCTTGCTGTTAGAATCACCAAATCAAAAACAGATGAGAGGAACCCAGGCTGGCATCATTTTAGAGTTGGCAACACCTTTCCAAAGTTTAAGTATTAGAGGACCAGAGGAGGAAAAGCCCCAGAGACCATCCATGATTATGGTGCACTGACCACTCTCATTTATAGTTACCAGCCTTTTATTAGTTTCCTAGGGCTGTTAGGAATGAAGTGCCACAAACTGTGTGGCTTAAAAAAATAGAAATTTCTTCTCTCACAGTTCTAGAGCCTGGAAGTCTGAAATCAAGATGTCAGCAGGGCCATGCTCCCTCTGAAGGTTCTAGGGAAGAATTTCTCCTTGCCTCTTTCAGCTTCTCGGGGCCCCCAGCATTCCTTGGCTTGTGGCAGTGTCACTCCAATCTCTGCCTCTGTTTCCATGTGACCTGTTCCTCTTATATGTCTCTCTGTGTCCTTCCCTGTTGTAAGGAAATCAGTCATGGGATTTAGAGCCCACGCTAAATCCACGATGATTTCATCTCAAGATCCTTAACAATTACGTATGCAAAGATGCTATTTCCAAATAGCATTATATTCTGAGGTTCTGGGTGGACATGAACTTGGGGGGACACTGTTCAACTCACCATAAAGCCTTAAAAAAATGGCCTTTCTGACACTGAAAAGTTTTAGCAAATCACAATGGCTACATGCCTTGGAAAATGGGGCTCCAGAGGCCTATTCCTTCACCTTGGTCCTCAGTTGGTAAAAGTGTTAGGGTTATTATATATTTCTCTTGCTATTTAGACTCTCTCTCCTGGGCACCAGATGGCAGTGTAAATTGAGAAAGCAGTTAACATGCTGTCTTTCCTGTAAAAAGCTTTCATAAGAGAAACTGGTGAACGTTTAGAGCCCTTAGCTGCTGAAACTCTTGTGTTTCTTCAAATCAGTGTTTAATTTTCAAGAGAGGAGAGGGAAGCTATTGTAGTATCTTGGTAGGATTATGCGTTGGGGACTGTAGTAGTTAATGGTTGGCCTGAGAAGCTCTCATTTTACCCAGTAACATTTTGGGTGGAGGGTGGGGGATAGAAGAGACCATTCTTGGAGATATGGGTTAATCCTCAATCTGTATCAGTTTGGGGAAGGCACCAGGCAGACGGTATGTGACTTCTCGTGAGATTCTATTTCTTTTGCCAAGTTAACTTACTGTTATTATAATTCAATGTTTATTTTCGACAG
Seq C2 exon
AGATCGAAGGGCATTCTTCTGGGAGTGGTTGGCACAGATGTCCCAGTGAAAGAACTTCTGAAGACCATCCCCAAATACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000157445:ENST00000474759:15
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.011 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0274313=Cache_1=FE(23.5=100)
A:
NA
C2:
PF0274313=Cache_1=FE(26.5=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development