RnoINT0028149 @ rn6
Intron Retention
Gene
ENSRNOG00000031287 | Cacna2d3
Description
calcium voltage-gated channel auxiliary subunit alpha2delta 3 [Source:RGD Symbol;Acc:631361]
Coordinates
chr16:5166031-5167428:-
Coord C1 exon
chr16:5167357-5167428
Coord A exon
chr16:5166112-5167356
Coord C2 exon
chr16:5166031-5166111
Length
1245 bp
Sequences
Splice sites
5' ss Seq
ACTGTGAGT
5' ss Score
7.94
3' ss Seq
TTAATGTCTATTTTCTACAGAGG
3' ss Score
7.47
Exon sequences
Seq C1 exon
CTTGCTGATGATCAGGGCCTCGTCTTGATGACCACAGTGGCCATGCCTGTGTTTAGTAAGCAGAACGAAACT
Seq A exon
GTGAGTATGGCAATGTGCCCTCTGCCTGGTGCTGGAGGTGTGGGGGAGGAAGGTTGTTTCTCCAATTCCTTTGCATCTGAGCTCTAGAGAAAATGGTTTCTCTGTTCCCCGTCAGGGTACTGTATGTGAGTTTATCCTCAGTATTTCACCCTACTGTGAGGACCAGTGCGTCCAGTGTAAATGAGAGGATAGGCAGAGTTCTTAGCATCCCTAACCCCTCTCTAAAATGTAGACACTCAGTATCTAGAGGAGGAAAATTCTCAGACAATTCTTGATTGTGGCGGCTGCCCTTCTCCTCCATTATCTTTAATTTCTTGGAGCAGAGGTATCGAAGTACTGAAAAATGGAATGGTGTACCAACTAGCTGTGGATCCTGAGAGTCTGAAATCAAGATGATTGCAGAGCCATGGTCCCTCTAAAGGGACAAAGGAAGAAGGCTTCCTTGTTATTTCTGGCTGCTGGAGCCCCATACCCTTGGCAGCTTCATTGCACATTAGTACGTTTGTATGTGTCCTTCTCACTACAACCAGACCTCTTCTTCCTAAAGAGATCAGTCACTCTATTTATGTACCTCTATGAACCGAAGATGATTCTTCTGGAGGTCTTTAGCTATAGCATCTGCAAAAGCCCTATTTTTTCCAAATGCCATTGGATTCTGTAGTTGAGAGAGTTTGAGTTTGCCAGAACATGACTTAAACCACAAACAAAACCATAAAGCATCAGACAGCAGTAATTTATATGTTATTCCTAATAGCCTTTCTGTTATTGGAAGTTTCAACAAATCACAGTGGCCTCCTGCCCTGGGACCCTGGTTCTACAACACTGCATATATATATAAACTGCTGATATATATATATATATATATATATATATATATATATGTAAACAAATAACAAAAAAGTGCTTCTCTCTGACCACTAGATATCTTCTTTGTGAATACCAGATGGTAGTGTATGCCAGGGGAATAAAACAGATGCCACTATAATCTGCTTCATAATCTGAGTCTTTATGCATGAAACTTCTGGGCTCCTGCACACCATATTTCAGTCTTCAAGAAGAAGCAGAACACTAGAATGTCTTGGCGTCAGTGTGCTGCTGTTAAGTCAGAGACAGTCCCCTTCTTGACTAGCTATGCTTTGGGTGGAAAGTAGAATGTAAAAGAGGCCTGTGGGGATTTGAGTTAGTGGTCTCTGGGAAGATCACATACTAACCTATTGTATTCTTCTTAATGTCTATTTTCTACAG
Seq C2 exon
AGGTCAAAGGGCATTCTTCTGGGTGTGGTTGGCACAGATGTCCCAGTAAAAGAGCTTCTGAAGACCATCCCCAAATACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000031287:ENSRNOT00000048043:14
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0274313=Cache_1=FE(25.0=100)
A:
NA
C2:
PF0274313=Cache_1=FE(28.3=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]