BtaINT0030461 @ bosTau6
Intron Retention
Gene
ENSBTAG00000013117 | CACNA2D3
Description
calcium channel, voltage-dependent, alpha 2/delta subunit 3 [Source:HGNC Symbol;Acc:HGNC:15460]
Coordinates
chr22:46690773-46692174:-
Coord C1 exon
chr22:46692103-46692174
Coord A exon
chr22:46690854-46692102
Coord C2 exon
chr22:46690773-46690853
Length
1249 bp
Sequences
Splice sites
5' ss Seq
ACTGTGAGT
5' ss Score
7.94
3' ss Seq
TTAATGTTTCTTTTCAATAGAGA
3' ss Score
8.02
Exon sequences
Seq C1 exon
CTTGCTGATGATCAGGGCCCCGTCCTGATGACCACGGTCGCCATGCCTGTGTTTAGTAAGCAGAATGAGACT
Seq A exon
GTGAGTACAGTGACTGGATTTCCTTCTTGATGCTAAGGGGGTCGTTAACTCAGACCCTCTCTGACTCAAGTTCTGGTGACCTTTATTTACTTATTTAACTTAAGGATGGAGGATGTATAATTTTTCCTCACTTTTAATCCTGCTGTTAGAATCATGAAATCAAGAATAGATGAGAGGAATTTAAGCAGGCATCTTTTTACAGTATGCATCACTTTTCCAAAATTGAAGTGTTTAAATGACCAGAGGAAGGAAATCTCCAGAAAGAATCCTTGATTGTGATGGGATGATCTCACTCTCATTTATAGGTCCCAACCTTGAATTAGATCCCCAGGGCTGTGACAGTGAAGTGTTATAGATGGGATGGCTTACAATAGACGTGTATTTTAACAATTCTAGGGGCCAGAAGTCTAAAATTAAGAAGTCGATTGTAGGGGAGACTCCTTCCTTGCCCACTCCAGTCTCCACCTCTGTCTTCACACGGCCCTCTTCTCTGCTTATCTCTGTATCCTTTCCTCTTATAAAGACACAAATTGTTGGATACAGGCCCCATCCTGTGTCCAGGATAATTTCACTTTGAGATCCTTGATTAAATACATCTACAAAGACCCTATTTCCAAATAGGAACATGGCCTGAGGTTCTGGGGGCAGTTGCATTGGGGTGAAACAGCAGACAGGATAGTAGCAATGTGTATCTTATTTTAGAAGGCCCTTTCTGACATCAGAAAGTATAGCACATCACGTTGACCTTGGGACCTGGAACCCTAGAGGCCTATGCCTTTACCCCAGTCCTTGGTTCCAACTGTCTGGAAAAATGTTAGGGTTTTTGCATCTTTCTCTGGCTATTTAGTCTCTTTCTCCTGGGCACCAGATGGCAGTATAAATTGAGAACATAGTTAACATGCTAAGTGTTTCCTGTAAAAAGTTTCTGTAAGAGAAGCTGATTAATGATTGAAACTCCTTGGCCTCTTCAGATTCTTAATTTTCAGGAGAGAAAAGGAAATGGTTCTTAGGGTGTGTGTTGAGGGTTATAATAGGCAATGTTTGGCCTGAGAAGCTGCCATTCTTTCCTAGGAATGTTTTGGGTGGGGAATAGAAATTACCTCTTGCAAATCTGGATTAAGCTTCAATTTCTCTCAGTTTGAAGAAGGTTCCAGACAGTGCCTATGGTGTGTGACTTTTCAGGACATTATATTTATTCTGCCAAATTAACATTCTGTTGTTTTTATTGTTTAATGTTTCTTTTCAATAG
Seq C2 exon
AGATCAAAAGGCATTCTTCTCGGTGTGGTCGGCACAGATGTCCCAGTGAAAGAACTTCTGAAGACCATCCCCAAATATAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000013117:ENSBTAT00000061412:10
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0274313=Cache_1=FE(23.5=100)
A:
NA
C2:
PF0274313=Cache_1=FE(26.5=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]