HsaINT0026477 @ hg38
Intron Retention
Gene
ENSG00000157445 | CACNA2D3
Description
calcium voltage-gated channel auxiliary subunit alpha2delta 3 [Source:HGNC Symbol;Acc:HGNC:15460]
Coordinates
chr3:54879018-54879411:+
Coord C1 exon
chr3:54879018-54879089
Coord A exon
chr3:54879090-54879349
Coord C2 exon
chr3:54879350-54879411
Length
260 bp
Sequences
Splice sites
5' ss Seq
GGGGTACAT
5' ss Score
1.77
3' ss Seq
TTTTTTTTTTTTCAATCTAGAAA
3' ss Score
9.36
Exon sequences
Seq C1 exon
TTGAGAAATGCTATGGTGAATCGAAAGACGGGGAAGTTTTCCATGGAGGTGAAGAAGACAGTGGACAAAGGG
Seq A exon
GTACATTTTTCTCAAACATTTTTGCTGCTTAATTTAAAACAAACCACTGTGAAAAATTAGCTTTGAAAGCTATATCTGGAATAAATATCTTTCGCTGAGATCATTTTTCTCTTGTCTTTACTTATCTCAAACAAGATTCATGTAGTACTGTTAACCTGATCATAGTGTGTCCATTTATTTTTATTTATTTCTGAAGACGTCACTTAGCAGACTAACCATGTTTTCTTTTCTCTACGACTTTTTTTTTTTTTTCAATCTAG
Seq C2 exon
AAACGGGTTTTGGTGATGACAAATGACTACTATTATACAGACATCAAGGGTACTCCTTTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000157445:ENST00000474759:19
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development