MmuINT0027824 @ mm10
Intron Retention
Gene
ENSMUSG00000021991 | Cacna2d3
Description
calcium channel, voltage-dependent, alpha2/delta subunit 3 [Source:MGI Symbol;Acc:MGI:1338890]
Coordinates
chr14:29063885-29064318:-
Coord C1 exon
chr14:29064247-29064318
Coord A exon
chr14:29063947-29064246
Coord C2 exon
chr14:29063885-29063946
Length
300 bp
Sequences
Splice sites
5' ss Seq
GGGGTACCT
5' ss Score
2.5
3' ss Seq
ACTTTTCCCCCCCGATCTAGAAA
3' ss Score
8.51
Exon sequences
Seq C1 exon
TTACGAAATGCCATGGTAAATCGGAAGACTGGGAAATTCTCCATGGAAGTGAAGAAGACCGTGGACAAAGGG
Seq A exon
GTACCTTTTTCTCAAACATTCATTAAAACAAGCTACTGTTCAAAAAGAAAATTAGCTTTGAAGGTTCTATCTGGAATAAATATCTTTGGCCGAGCTCACTTCTCTCTTGTCTTTACTTATCTCTAACAAGACTCATGTAGTGCTATTGTTAACCAGTTCACAGTGTGTCCGTATTTTATTTTATTTTATTTTATTTTATTTTATTTTATTTTATTTTATTTTATTGTTGGTTTCTGAAGAACATCACCTAGCAGACTAACTGTGTTTTCTTTTCTCTATGACTTTTCCCCCCCGATCTAG
Seq C2 exon
AAACGGGTTTTGGTGATGACCAATGACTACTACTATACAGACATCAAGGGTACTCCTTTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000021991:ENSMUST00000022567:19
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types