BtaINT0030465 @ bosTau6
Intron Retention
Gene
ENSBTAG00000013117 | CACNA2D3
Description
calcium channel, voltage-dependent, alpha 2/delta subunit 3 [Source:HGNC Symbol;Acc:HGNC:15460]
Coordinates
chr22:46651197-46651591:-
Coord C1 exon
chr22:46651520-46651591
Coord A exon
chr22:46651259-46651519
Coord C2 exon
chr22:46651197-46651258
Length
261 bp
Sequences
Splice sites
5' ss Seq
GGGGTACAT
5' ss Score
1.77
3' ss Seq
TTTTTGTTTTTTCAATCTAGAAA
3' ss Score
8.85
Exon sequences
Seq C1 exon
TTAAGAAATGCCATGGTGAATAGAAAGACCGGGAAGTTTTCCATGGAGGTGAAGAAGACAGTGGACAAAGGG
Seq A exon
GTACATTTTTCTCAAACATTCTTGCCGCTTAATTTAAAACAAACCACTGTGAAAAATTAGCTTTGAAAGCTCTATCTGGAGTAAATATCGTTCACTGAGCTCATTTTTCTCTTGTCTTTACTTATCTCAAACAAGATTCATGTAGTACTGTTAACCTGATCATAGTGTGTCCATTTATTTTTATTTATTTCTGAAAACTTCACCTAGCAGACTAACCATGTTTTCTTTTCTCTACGACCTTTTTTTGTTTTTTCAATCTAG
Seq C2 exon
AAACGGGTTTTGGTGATGACAAATGACTACTATTATACAGACATCAAGGGTACTCCTTTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000013117:ENSBTAT00000061412:14
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]