HsaINT0026582 @ hg38
Intron Retention
Gene
ENSG00000167535 | CACNB3
Description
calcium voltage-gated channel auxiliary subunit beta 3 [Source:HGNC Symbol;Acc:HGNC:1403]
Coordinates
chr12:48824669-48824968:+
Coord C1 exon
chr12:48824669-48824733
Coord A exon
chr12:48824734-48824948
Coord C2 exon
chr12:48824949-48824968
Length
215 bp
Sequences
Splice sites
5' ss Seq
TAGGTAGCC
5' ss Score
3.97
3' ss Seq
GTATTTCCTTTTCCAAAAAGCCA
3' ss Score
4.26
Exon sequences
Seq C1 exon
GAGATCTGGGAACCCTTCCAGCCTGAGTGACATTGGCAACCGACGCTCCCCTCCGCCATCTCTAG
Seq A exon
GTAGCCTCCCCCCAACCCACCCATTTTGGGTAGGTGGGTAGCTAAGACACAGGGAAAGAGGGGATCCTGCCCAAGTGAACTGTGTGGGAAGGGTTTGTGGAGGGATTGGAAGGGGTGGGGAGAAGCCAGTATCTCCCCTGGGGACGGGGATACCATGCCCCCAGGGACCTTTCCCCCTTCACCAACTTTAATCTTGTATTTCCTTTTCCAAAAAG
Seq C2 exon
CCAAGCAGAAGCAAAAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000167535:ENST00000301050:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.954 A=NA C2=0.971
Domain overlap (PFAM):
C1:
PF0062516=Guanylate_kin=PU(0.1=0.0)
A:
NA
C2:
PF0062516=Guanylate_kin=PU(3.5=85.7)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development