RnoINT0028249 @ rn6
Intron Retention
Gene
ENSRNOG00000054274 | Cacnb3
Description
calcium voltage-gated channel auxiliary subunit beta 3 [Source:RGD Symbol;Acc:2248]
Coordinates
chr7:140321029-140321301:+
Coord C1 exon
chr7:140321029-140321093
Coord A exon
chr7:140321094-140321281
Coord C2 exon
chr7:140321282-140321301
Length
188 bp
Sequences
Splice sites
5' ss Seq
TAGGTAGCC
5' ss Score
3.97
3' ss Seq
TTATTTCCTTTTCCAAAAAGCCA
3' ss Score
4.95
Exon sequences
Seq C1 exon
GAGATCCGGGAACCCTTCCAGCCTGAGTGACATTGGCAACCGACGTTCCCCTCCTCCATCTCTAG
Seq A exon
GTAGCCTCCTCCCCTCAGCTTACCCACCTTGGGTAGGCAAACAAGGGGGTCCTTCCTGTGAACGATATCGGAGCGGGAGGGATCGGAGCAGCCGGGGAACCCTGACCTCCCCTGGGGAAGGGACGCCCAAGCTCCACAGGGCCTTTTCCCTCCACCAACTTTAATCTTTTATTTCCTTTTCCAAAAAG
Seq C2 exon
CCAAGCAGAAGCAAAAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000054274:ENSRNOT00000081206:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]