MmuINT0027924 @ mm9
Intron Retention
Gene
ENSMUSG00000003352 | Cacnb3
Description
calcium channel, voltage-dependent, beta 3 subunit [Source:MGI Symbol;Acc:MGI:103307]
Coordinates
chr15:98471117-98471409:+
Coord C1 exon
chr15:98471117-98471181
Coord A exon
chr15:98471182-98471389
Coord C2 exon
chr15:98471390-98471409
Length
208 bp
Sequences
Splice sites
5' ss Seq
TAGGTAGTC
5' ss Score
3.06
3' ss Seq
TTATTTCCTTTTCCAAAAAGCCA
3' ss Score
4.95
Exon sequences
Seq C1 exon
GAGATCTGGGAACCCTTCCAGCCTGGGTGACATTGGCAACCGACGCTCTCCTCCTCCGTCTCTAG
Seq A exon
GTAGTCTTCCCTCAGCTTACCCACCTTGGGTAGGCAAATAAGACGCAGTGGAAGGGGGTCCTTCCCAGTGAACTATGTGGGAAGGGGGCTGGTGGAGGGGCCAGAACAGCAGGGAGAGCCTGTTACCTCCCCAGGGGAAGGGACTCCCAAGCCCCCCAGGGCCTTTTCCCTCCACCAACTTTAATCTTTTATTTCCTTTTCCAAAAAG
Seq C2 exon
CCAAGCAGAAGCAAAAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000003352-Cacnb3:NM_007581:5
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: