HsaINT0027169 @ hg19
Intron Retention
Gene
ENSG00000130559 | CAMSAP1
Description
calmodulin regulated spectrin-associated protein 1 [Source:HGNC Symbol;Acc:19946]
Coordinates
chr9:138742168-138754454:-
Coord C1 exon
chr9:138754313-138754454
Coord A exon
chr9:138742308-138754312
Coord C2 exon
chr9:138742168-138742307
Length
12005 bp
Sequences
Splice sites
5' ss Seq
ATGGTGAGT
5' ss Score
10.13
3' ss Seq
ATTTTCTTTTTGTCTATTAGATA
3' ss Score
8.71
Exon sequences
Seq C1 exon
GTCCGCTATCGACGAGAGCACCTTTCTGCTAGGCAGTCACCCTACTTCCCGTTGTTGGAGGATTTGATGAGAGACGGCAGTGATGGTGCTGCTCTCTTAGCTGTGATTCACTATTATTGCCCAGAGCAGATGAAACTGGATG
Seq A exon
GTGAGTGGAGAATGCTTCCCTGAAACAGATCCGAAAAGGCTTAAAGGAAAATTATAGTGTACATTGATCCACATATATATTAAAAAAAAAAAAGAGAAAGAAAATGGAATCCTTAATATAAATTGGGATGTTAGCCTATAGATGAAAAAATTGGGGGATGATGTGCTCATACTTAACCTGCATTTTATCTGATGACAAAACTGCACTTTGAAATTAGCTGGGTGTGGTGGCACACGCCTGTGGTCCCAGCCACTCGGGAGGCTAAGGTGAGAGGATCACCTTAGCCCGGGGTGGGGTGGGCGGGGGGTGGTGGAGAGGGAGAGAGAAATGGTACTTCAAAGTATCTGAGTAATGTGTGAAAGTATTTGTGACTTTATCTATGTCTCAGAATGGGTAGCTTTTGTAAATCCTTCCTCAATTGATTTAAATCACCTAGAACTTAGTTTGAGGATGGGAAAATTAATGCAAAATTGAATCTGTTTATGAACCATTTATGAACAACTGCCACACGCTTCGTGTTGGGGACGTTCCGATGACAGTGTATCTCCCTCCAGGTGTTTACACCCTAACAACGAGGAGAGAGAGAGAGTGACTGTCACCAGCACGACAGTGGGTGTCTGGACAGGGGCTGGGGGAGCATGAATTCTGATTTAGGTTTTGCTAAGCCCCATTCATTCTGAAGTAGGCAGATACAAGGCCAAGAGGTGCCCCCCAAACTAATATGGAAACATTTGTGTCAGACTTCAGGTGCTGGGTGGATTGAGCTGGCATTGATCTTGTTCCTACTGGGCGTAAAAATGCTAGAAAATATAGTTTCTTAGATAAAATAGTTTCACAAATATATAGCTGCACTTAAAGGAACAGGCTGGATATGGTGGCTCATGCCTGTAATCCCAGCACTTTGGAAGGCCGAGGCGGTAGATCACCTGAGGTTAGGAGTTAGAGACCAGCCTGACCAACATGGCGAAACCCTGTCTCTACTAAAAATTAGCCAGGTGTGGTGGCGCGTGCCTGTAGTCCCAGCTACTTGGGAGGCTGAAACAGGAGAATTGTCTGAACCTGGGAGGCAGACATTGTGGTGAGCCGAGATTGCACCAGAGAATTCCAGCCTGGGCAACAGAGCGAGACTCTGTCTCGGGGGGAAAAAAAAAAAAAAAGGAAGAAGGAGAGAGCCTCAGGTACCAGGAGACGGTCTCTGTCATTGAGTGAAAACTCATGAGTGGAGGACAGGTAGGTGCCCTGGGGCCCCTTGGGCCTGAGTTTCCATGTTCGTTTGGCCCTGGGCCTATGTGCTGTCAGGAGCTGTGACTGGGACCTTTTGGGAAGAGGACTAGAAAACTCCACCTACTGCCCAGGAGTGAACTGAGGAGGCCTGACAGATGCCCTTGGCTCTGGGGATGTGGAGGAGAAGCTCTTTAAGGAGGAAATGCAGCTCTTGGGTACACGGTGGATCAGAGGGAGGTTGAGATGTGTATCACCCATGTGGCGTGGGAATACTGGTTGAATGTTAGTGCAACAAGTAGTCTAGAACTAGTGAAACTCATGGTCCCTGGCAGGGATAAAGCACAGCTTGGCTGTGCAGGGACATTTCCATGAGCCAGGGCATGCTGGCTGCCCACTGAGGAGAACCCCTGCTGGAAGACAAACTCTTTGAAAAATCAGAAACCACGCAGGGAAAGCAGGCACTGCAGCTGATTTGGCACCAAGACATGGGTGAAAGATAACAGGATATTTAAAATGATGGACATTAAAAAGAGAACTAGACACCTTAAAGAAGACGGCGGAGGGGTTGGGGTCTTCAGATGTGCTGTGATTTTCTTCATCCTCCAGGTCTTGTCTTGGCACTTTTTTTTTTTTTTTTTTTTTTTTGAGGCAGAGTCTTGCTCTGTCACCCAGGCTGGAATGCAACTGCGTGATCTTGGCTCACTGCAACCTCCACTTCCCAGGTTCAAGCGATTCTCCCACCTCAGCCTCCCGAGTAGCTGGGATTACAGGTGTCCACCACCACACCCAGCTAATTTTTGTACTTTTAGTAGAGATGGGGTTTCACCATGTTGGCCAGGCCGGTCTGGAACTCCTGACCTCAGGTGATCCACCTGCCTTGGCCTCCCAAAGTGCTGGGATTACAGGTGTGAGCCACCGCGCCTGGCCATGGGACCTTCTTTTATGTGTTCATCTCTTACATTCTCCCTGCTGAGTTCTGGATGCTTTTTATTTTATTTATTTATTTTTTATGGAGACAAGGTCTCACTCTGTCACCCAGGCTGGAGTGCAGTGGTGTGATCATGGTTCACTGCAGCCTTGACTTCTCTGGACTTCTCAGGCTCAGGTGATTATCCCATCTCAACCTCCTGAGTAGCTGGGACTACAGGCACGTACGACCATGCCTGGCTAACTTTTGTATTTTTTTATTTTTTTTTTTTTTGTGGAGATAGGGTTTTGCCATGTTGCCTGGGCTGGTCTCGAACTCCTGGGTTCAAGCGATCTGCTTGCCTTGGCCTCCCAAAGTGCTGGGATTCCATACGTGAGCCACCGCACCTGGCCCTGGATGCTTTCTGAAGTCCACCTTCTAGTTCGTAAATTTGACTTTTCCTTCATTGTGTGCAGCCTGCCCTGTATGTCTGTTGGGGATCTTAAGACAGAGTGAATTGCTAAGGATACAGGGTCATTGCCAATTATGATCATGTGAACAGTTTACAGGAAGGTGTGACTGTATTGAAGCTCATTATCTAAGAGCAGAACATCAAAATGGATTTTAAAAAATGGCAGAGTTACGGCCAGGCGCGGTGGCTCACCCCTGTAATCCCAGCACTTTGGGAGGCCGAGGTGGGTAGATCACGAGGTTGGGAGATCAAGACCATCCTGGCTAACATGGTGAAACCCCGTCTCTACTAAAAACACAAGAAATTAGCTGGATGTGGTGGCGGGCACCTGTAGTCTCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGTGAACCCAGGAGGTGGAGCTTGCAGTGAGCCGAGATCGTGCCACTGCACTCCAGCCTGGGTGACAGAGCGAGACTGTCTCAAACAAACAAACAAACAAAATGGCAGAGTTACAAGGAGAAATGGACAGAGCCACATTGCTGACTTATGTAACAGAAACTGATTGATAAAGCAGATCATTTAGTAAGGCCATAGAGGACTTCAGGCTTCATCCAGTGCACCAGCCACTGTGGAATCTGCTCACTTACAGACAGTAAAGACAAACATGGGAGCCTTTATAAAACGTGCAGTCGATTAAGGCCACAGGTGAGACTGCAGCAGATCCCAAAGAATCAGTACATTCTCCACAGTGCAGTAAAGTGAGAACTCACCAACTAGAAGATGCAGCTTCTTTTCCTGCCTGTGAATTAATGATGGTTCATTTCAGGTGTGAATTTGACTGGATTGAGAGAAGCCTAGGTGACTGGTGAAGCATTGTTTCTGGGTGTGTCTCTGAGGGTGTTTCCAGGGGAGATGGGTGTGAGTCAGTGGCTTGAGAAGGGAAGACCTGCCTTCAATGTGGGCAGAAGAGGGGGACTCTCCCTCTCTGCTCTCTGCTCTCTCTCCCTTACTGAGTGGGGCACCTTCTCTCTTCCTGTCCTTGGACATCAGACTCCAGGTTTTTTGGGTTTTAGACTCTGGGACTTGCACCATGGCTTCCTGGGGGATTTTAGGCCTTTGGCCTTGGCCTGGGGGCTGCACCATCAGCTTTGCTGGCTCTGAGGCTTCCAGACTTGGACCCAGGCATGCTGCCACCTCTGATTCACTAGCTTGCAGATGGCCTGTTGTGGGATTTCTCTGTCTTTGTGATCATGTGAGCAGATTTCTCTGATTAAATCCCTTCTCGTATGTCCTACTGGTTCTGTCTGTCTGGAGAACCCTGACAAATGCACAGTTATTCTAAAATCTTAAAGATTGAGTGCCTGGAAGCCAGAGAAGGCATTTAAATATTTCATGGATCATAGGGGAAAGAGTAGTGGGACTTGCTAGTGTGAGCTCAACAGGGGCAGGGTTTTACCTGTTTTGCTCACTGATGTATCCCAGTCATCTGAAATAGTGTCTGGGGCCAGTTGGTGTTGAGTAGGTATTTGTTACTAGAAAAAGAACGTAGAAGTAAACCCAAAAAAAGTTGAAGGAAGGAGAAATGAAGGGCAGTTTTCTATCCATTTCTGTTAGTCAGAAGTCACTCCCAAACAAGGAGAATAAGGAACTGAATTACAGATTCCATTTTGGATGAAACTAAGATATATCTGGACTCTGAACAAGTCCTCTAATGGAGAAGTAATTAAAAAAAAAAAAAAGGCAAAGTGGAGGAGGGGTGGGTGTCAAGCTGGGGACGCAAAGAGGCTCATCCTATAGGACCCTGGACAGCAGAACGGAGCACCAAGGATGCTGGTGGACAGCAGTGCCTGAGGGTGGATTCCTTGAAAGTTGGTCTCCAGCAATGAGAGCTCAGGTTCACTTTGCTTCTGATGCCTTTCTCCTCACATGCCCTCAGTAGATGCGGGACACTCTTGAGGAGAACTGAGCCAGATAGGCTCTAGCCTCAGACCCCAGGTGCAGGTAGGGATGAGGTGACACTGAAATCAGGGCTTTTGTGTAAAATTCTTCATACCCGAAGGTGAGACTGGTTCTCCTCCTGGTGCACCCTGCCCCAGAAGCCACCGTCTCTCTCACTTGACTCCATAATGCAGACCTGCCCCACATGCAACACAGGGAAGGATTCTTCTCTGCAGAAATCGGCCTCAGGAAAAAGACTCACAGTGACTCACTCTTTACTAGGAGCAGCAGCCAAAGATTCCTGACATTTGAGGAAAGCCACTGACCTGAATGAGAACCCAAATCAACAGAGATGGTGCAGGTGAGCAGGAGAAAATGTTAGAGATGAGAGGGTTTGGACCTCAGAACCAACAACAGGACTCTGGGAAACAATGTCTGCAAGATAGTGGCACATAACTGTGTACAGAATCATCAGACTCAGAACAGCTGTTGGAGTGCTACAGCTTGTTTAGAATTCTCTGGCAAATTCTAAAGAGCCGCCAAAAACCAGTTCTTGGGAAGGAAATATTTGGTTGCTAAGATGGGAGAGCCACTGAACTGCTAGAGGACAGTTGAAGAAATCTCCCAGAAAGTAGAACCAGAAAAGCAAAGAGATGGGAAATAAGGGAAAAAAGATGGAAAAATCAGGATCAGTCTACGAAGAAAGAGAAGAGAAAATAGGAGAAAAGAACTTAGTCAACACAAAATGTAGAAAAATGTCCCAAGGACATGCGTGGTAAGTAGGAAGGACCCAGTGGGTGGCCAGCAGGATTCCTGAAGAAGGGCCATGGCAAAGCCTACCATGATGAGCTCCGGAACCCCTGGGAAAGAGGAGATCCCAAATAACTGTGGAGAGACCAAGCAGGTTACACACAAGCAGGCAGCCCCAATGACACCAGATTCCTCAGCCACAGTCCTGGAAGGAAGATGACTGGGAGGTGCCTTCCCAGTGCTGGGGAGTGTGTGCACGCACACCATCCTGAAGAGGAGGTGGAGGGAGGCTCAGGCTGAAATCCACAGTGCCAGCCTTCCCATGGATGGGCCAGGAGCGTGGGACAAAGGCACAGACCAGGAGGAGGCAGTTGGCCTGTCCGGCTCAGAGGCAATAACAGGTGAATAACTGAGCCAAGTATTAAATCCAGGAGAAATGAAGAGTTGTGCAAGGAGTGTAAGTAGAGACACTGTGTAACCCAGCTGTGGAAGATGGTTACATAGTTATGGTGTATAGAGACTCAGTCTGGGTTTAATCACACATCCTGCTGTGTGGCCACTGGGGAGAGAGGCTGGGGAGGCACACAGAGGACCACCTGCACTGTGCTTGTCTGTTGTGACAGTGGGCTGTAGCCTCTTAGTCATAGGGTAGGGGATGGGGCTGCGTGTTCTCTTACCGAGGCCACAGGCAGAAGGAGTGGAATGGGCAGTGATAAGGTTTGGCTCTGTGTCCCTACCTAAATCTCTTCTTGAATTGTACTCCCATAATTCCCATGTGCTGTGGGAGGGACCTGGTGGGAGATAATTGAATCACAGGGGCAGTTTCCCCCATACTGTTCTCGTGGTAGTGAATAAATCTCATGAGATCTGATGGTTTAATAAGGGGAAACCCATTTAGCTTGGCTCTCATTCTCTCTCTTGCCGCCGTCATGTGACACGTGCTTTTCATCTTCCGCCATGATGGTGAGGCCTCCCCAGCCATGTGGAACTGTAAGTCCAATAAACTGCTTTCTTTTGTAAATTGCCCAGTCTCAGGTATGTCTTTATCAGCAGTGTGAAGATGGACTAATATAGGCAGAGACCTAGTTCTCTTAAGCTTTTCAAAACAAATAGTTTGGCTTTTTTGTTTTTGTTTTATTTTTTTGTGTTTTTTGAGACTGGAGTCTCACTCTCTTGCCTATGCTGGAGTGCAGTGGTACGATCTCGGCTCACTGCAAGCTCCACCTCCCAGGTTCACGCCATTCTCCTGCCTCAGCCTACCGAGTAGCTGGGACCACAGGCGCCCGCCACCGCGCCCGGCTAATTTTTTGTATTTTTAGTAGAGACAGGGTTTCACCGTGTTAGCCAGGATGGTCTTGATCTCCTGACCTTGTGATCCGCCCGCCTCGGCCTCCCAAAGTGCTGGGATTACAGGCGTGAGCCACCGCACCCGGCCTTTTTTTTTTTTTTTTTTTTTTAAATTGAGATGAAGTCTCCCTTAGTCACCCAGGCTGGAGTGCAGTGGCCCGATCTCTGCTCACTGCAGCCTCTGCCACCACCTGGATTCAAGCAATTCTTGTGTCTCAGCCTCCCAAGTAGCTGGGACTACAGTCACGCACCATCACACCTGGCCAATTTTTTAATATTTTTAGTAGAGATGGGGTTTCGCCATGTTGGCCAGGCTGGTCTCGAACTCCTGACCTCAGGTAATCTGCCCGCCTTGGCCTCTGAAAGTGCTGGGATTACAGGCATGAGCCCAGCCAGCTTCTTAAAGTAAAATACAAATTTTAAAATTTTGGCATGCAGCAATAGAAAAGGATGAGATCATGTCTTTTGCAGGAATGTGGATGGAGCTGGAAGCCATTATCCTTAGCAAACTAACAGAGGAACAGAAAACCAAATACTGCGTGTTCTCACTTAACAAGTGGGAGCTAAGACCGGGCGCAGTGGCTCACGCCTGTAATCCCAGCCCTTTGGGAGGCCAAGGTGGGTGGATCACCAGAGGTCAGGAGTTCAAGACTAGCCTGGCCAACAAGGTGAAACCCTGTCTCTACTAAAAATACAAAAATTGGCCGGGGGTGGTGGTGCACACCTGTAGTCTCAGCTACTCGGGAGGCTCAGGCAGGAAAATTGCTTCAACCCAGGAGGTGGAGGTTGCAGTGAGCTGAGATCACGCCACTGCACTCCAGCCTGGGTGACAGAGTGAAGCTCCATCTCAAAAAAAAAAAGTGGGAGCTAAATGATAAGAACTTAAGAACACAAAGAAGGAAACACAGACACTGGGGTCTCCTTGAGGGTGGAGGGTGGGAGGAGGGAGAGGAGCAGAAAAGATAACTGTTGGGTACTGGACTTAATTCCTGGGTGATGAAATAATTTGTACAACAAACCCCCGTGGCATGAGGTTACCTATGTAACAAGGCTTCACGTGTACCCTCCCAAACCTAAAATAAAAGTTAACAAAAATTGGCAAATTTGCTGGGTGTGGTAGCTCATGCCTGTAATTCTAGCACTTTGGGAGGCTGAGGCGGGGGGATCATTTGAGCCCAGGAGTTCAAGACCAGCCTGGGCAACCTAATGAGACCCCAAAAATTAAAAAGTTAGCTTGGCCTGGTGATGTGCACCTGTAGTCCCAGATACTCAGGAAGCTGAGACAGGAGGATCACTTGAGCTCAGGAGGCTGAGGCCACAATGAGCTGTGATTGTGCCACTGCACTCCAGATGACAGAGTGAGACCTGCTCTCAAAAAAAAAAAAGTTTTGGCAAATTTAACAGCAAAAAGTGAATAAAGTAGAAAAAATTCCAAAGTTCTAGAGAATATGTAAAACTAAAAGCTTATTGTTTTAAAGAATTAATAAAATAGATAATCTGGAAAGACTGATCAAGAATTCAGGTATAGCAGCTACTGAAATAAAAATACTGAGAATATTTGTGTGCCATATGTGTTTGAAATGTTAGACAAAATGAGCAATCTTCTTTGAAGCCAAAAGTGGTGGGCAGTCTAAATAGACCCATAACTACAAAGGAAACGGACTCAGGAGTCAACACATACATCCACAGGGACCAACTTCTTCCTGGGGCATTTCACCAGACTCTCAAGGAATTGTCAGCTCCTGTGTTATGTCAAGTGTCCCAGATAATAGGAAAAGATGGAGTGGCCCAAAAGGGGATTATTCCCTGACACTGAGTAGGCTATGAGAGGAAATTCTAGGCTGGCTTTCCATGTTAGTATGGATTGAAAATCCTATGTAAAATATTAGCGCAAATTGAACAGATTCTCTACAGTCATCTCAGTAAGGGCAGGGAATCACTTGTGGGCAGTCACTGCCCCCTTCTGATCGTGGCTCTGGGCCTCATAGGGACTTGATTGGACCTCATAGGCTGTTGACCCCACCTGTGGCAGGTGCAGTTCCATTGAAGGCCCAGGAGAAGCGGTGCCTTTGTGTCCTGACGGAGCGGGTTCTCTGAGCCTGGCAAGAGGAAGGTAGTGGGAGCCGTAGCCAGGGCTGCCCTGTGCCCCTGCCCTGCACTGCAGTGCCCACTCCCTATGAGCATTCTCTTGTCATGTGAGAACTGGGAGGCATTTGGGAGTAAGTGCAGCAGAAGAGAGGCGAAGAAAATCCATCGGCTTTTCTATTTCTCTTGGGAGAAGACTGAAACAAGTGTACTTAGATCCCCAGTCAGTATTAAAACTTGTGATTTCTCCAGATTGTTCTGAAAACTTGTCGCCAGTCCAGTAAATACTTTTGTCTTCACAGATATTAACAAGGCAATGCAGAAATTCTCTTGGATTGTGTTATTTCTGTGTCTCTCTCAACCATTTGAGAGTAACACAGCAAAAGTTGGGAAAGCTAACGTTGGCACACAGATCCCCAGCCTGGTCCTGACTCGCTCAACTACCCAGGAGCACCTGCTTGGCCCAGCGTCCCCTCATAGTTTCCCTTCATCTGGAGTCGTTTCCAGCCTTTACCTCTCTTGACTCTTGATGTTTTCGAAGAGTAAGGTTGTGAGTAGTGGCCCTTGGTGTGTTTGTCTGGAGTTTCCTTGCGGTGTGTCCTCCCAGCGTGTCACCTCAGGGGCAAGGTACTGGGACATCTCCGTATTGGTGACTCCAGCTTCACCCCTTGGTGCAGGTGGCATGTGCTGGCCTTCCCCACTTCTAAGCTTGCTGTTTTTGCTTTAGAATGCATTAGTAATTTGTGGGGAGAGGCTTTGGACTGTGAATACGTTTCTCATCAGACTCTCACCTGCTGGTCTCTCCACGTGTGGATGGCTTCCAGCCTCAGTGCATCTTTCCATTTTGTCAGCGTTTGCCCCACTTGCTTGCTTCTTTATTCATGTGTTTGTTTATATCCGGATGGCCTCATGGATCTTACTTTATTCAATAGGTCATAATTCATTACTTTCATTATTTATTTTGTTGCTTAAATTGTCCCAGATTTTAGCTGAGTAGTTTTGAAGAATAAGAATGTGCAGGGTATGTGCCCTACAAATACCAAATTTTGCTTAACTTTGCATTACCAAAAACAGTGTGGTTTTGGTTCCGGGGCAGTCACATGGACCAGATGAATAAACCACATGTAGAACTGAGAAAAGAGATGCTTTGCAGGGAATCTGGTGCCTTTGGGGTGGCCTCACCGAGGGAGCCGCGCTGGCTGGTCAAGAACATGGCGGCATAGACATCTCTATGGGAAAGTGCCGTAAAACCTCACCCCACCTGAGCCAGAAATACCCCTTCCTCGGAGTAAAGATGCAAACCTGAAAAGTAAAATTTAAGAATTTTGAGAAGATAAAGGCAAATACTTTTATGATGTTCGTGTAGAGATGGATTGCCAAAATTATAAAAAGCACAAATAGAAAAGATTGTTAAATGTAACCATATCAAAATGTAAAACTTTCCTGTGACAAAAGAACATCATAAACAAAATGAAATGATAAACTGTACCCATTGAAAATATTTGCAGCACACGTGACCTGATGAAGGACTGTCATCCAGTCCTTTCGTAACCACAATCCAGAAAGAATTCTAGAATCGGTAAGAAAAAGATGCACAGCCCAAGGCAGATATGGACAGGGTCCACAGGAGAGGACCCTTCATGACCAGTAACCATGAAAAAGTAAAGCCACAGCAGTCATCAGAGGCATGCTGTTTGAGAAGGAGGTGTTCACGCCCCTCCGCCTGGCAGACATGGACAGGTCGGTCATGCTGCGGTGCAGGTGGGAAGGAGCAAGCTGTGGAGTGCTGTGGGTGGGACTGGAGCGAGGCACAACCAGGCAGAAGGGCGTTGCCAGGTGACACAGGAGGGCGTGCCTAGCTCGTGGCCCAGCGAGTCCCCTCTCAGAGTATGCCTGGGCAACACCCGTCTGTACACGCATAGACAGCACACGCAAGCTTTGTGATGGCAGCATTTGTCATAATTGTGAGAAATCGTGGAGGACCATATAGCGGTCAAGATGAGTGACGGAAATCTCTCCGTATCAACATAGATCTGTTTGAAAACATCATACTGAGTTTTGGGGCAAAAACTGGCTGCTAAAATGAGGCATAGCTTGATACCATGAATGTAAGTTTCTCAAGGCTGAGACAACACTGTTTGTGTTACTTGTGGATGCAGACAGTGTGTAGAATACTCAGGAGGAGTGGAAAGGGTTTGTGGCAGTGTTGGGAGAATGGTTCCCTTTGGAGATGGAGATGACTTCGGCTGTTTTATTTCTAAAAAAGAAAAGATCTGAAGCCTATAAGACGTTAACATTTGATGGTCAGAACTGTACAAAAGGAAACATCCTTAGCAGTGTGAGTGTGCACAGTTCCTCAGCTTTAAAGTTTTCTTTTGAGAATGAATGCTGCTTAGGTGACTGTGGAGGGCAGTTCATGAACGACTCTGGATGCTGTGGCTCCAGTTTGTACGTACTTCTAAACCCTTGAAAATGGTTTTTTCCTTAGAAATAAAATTTATGTAAAAAGTTATTTCTGAAATTCTATTTTTTCTCTATGTATATATTTACAGGCAAAATAAAGTCAAGTCACTTCTCACGGAGTCCTGAGCTGCACCGTGCTCTCCGCAGGGCTCTTTGTCTGAGGGCCACCCCCCACTCCACACCAGGGTGCCTAGACTAGGGGGAGGCCTGCTCTTTGGTCCTGTGACTTGTTGCCCATACTGGTGCTTCCTCCATGGAGGGTCTGCAAAGTCACGTGCAATGGAAAGTTGCCCTGCAGATGCTATAGCCACCAGTCTCCACCTCTTCATGGAAAGAGACTTGGGCTATGCATTGTCACTTGATCTTTGTGATTAGTCACATTCCTGTGTTATCACTGAGTGGGCGTGGATGAGCCTGATGCTTTACGTTTTATTCATTTCCCTTCCCCCTGCCCTTTACAAACACGGAAACCTTGTGCAGAGGGTTTCTGATGGGCGGAAGAAACTCGGCTCAACATTTACTCGCTACGTGCAGCATGGCTCTGCTGTAAAGTGAAAGGTGATTGTTGCTGTTTGTTTTGGAAGCCCACTCTTGAGATCTGAGCGATTTCTATTATGCTTTCTGGATGTTCACCATCAAATTCAGACTTGAGAGGTTCCTGGAGTTGTCTTGAGTGTTTTCTTTTTATACTTAGTGTTACTTGTTGTACATCCTATACTCCCTACATCTCTCAATGTCATTATCTTCATTACTACCTTTATGTAAAATGGTTTTCATTTTAGAATGCTTCTCTCTCTCTCGAAGCAGAATACCTTTACAATAAATTGTGATTTTCTTTTTGTCTATTAG
Seq C2 exon
ATATATGCTTAAAGGAGGTAACGTCGATGGCCGACAGTCTGTATAATATTCGGCTTCTGAGAGAATTCTCCAATGAATATCTTAATAAATGTTTTTATCTCACCTTGGAAGATATGCTGTATGCGCCATTAGTGTTGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000130559-CAMSAP1:NM_015447:5
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=0.007 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF119713=CAMSAP_CH=PU(48.8=85.4)
A:
NA
C2:
PF119713=CAMSAP_CH=PD(50.0=89.4)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)