DreINT0040927 @ danRer10
Intron Retention
Gene
ENSDARG00000035122 | camsap1b
Description
calmodulin regulated spectrin-associated protein 1b [Source:ZFIN;Acc:ZDB-GENE-070705-301]
Coordinates
chr5:64949573-64952533:-
Coord C1 exon
chr5:64952392-64952533
Coord A exon
chr5:64949713-64952391
Coord C2 exon
chr5:64949573-64949712
Length
2679 bp
Sequences
Splice sites
5' ss Seq
ACGGTACAA
5' ss Score
4.76
3' ss Seq
CTTTATTATATCATCTGCAGATA
3' ss Score
8.94
Exon sequences
Seq C1 exon
GTACGGTATCGGCGAGATCACGCTTCAGGTCGACAGCTTCCCTATTTCCAGATGCTGGAAGACCTGATTAGAGACGTGTGTGACGGTGCTGCATTGCTGACCGTGGTCCATTACTACTGCCCTGAACTGATGAAGCTTGACG
Seq A exon
GTACAATCAAACATTCTCTACAGTTAAAGTCTATAAATATATATATATATATATATATATATATATATATATATATATATATATATATATATATTTTTTTTTTTTTTTTTTTTCTCAAATATTTCCCAAATGATGTTTAACAGAGTAAGGAAATTGTCACAGTATTTTCCATAATTTTTTTTTCTTTAGATAAAGTCATTTTGGCTAGAATAAAAGAATTTCAAGTATTTTTTTAAACCATTTTAAGGTTAATATTATTATTTTTGGTAGTAAATTCTGGTAGTAAAACCCCCTAAAAACAGTTTAAACACTCTTCTTTCACCCTGTTTGCTGCTTGCTCCTGAGCAGTTTATTTTATGTAGACCTGACTCAGAGTTACGCCATTGGTTCAGTTGTTGCTATGTCAGCCTGCTCAAACAAACAGCACAGAAGTTTTGATGGCGCCAAAGTGCCTGCATTCTTCATAAAATCAACATAGGAATGGTTTGCTTACAGTTGTTTGCTGCATATTAAGCTGGAAAAGAAGGTATTTTTACACACTTGTACTTTATTTCTTTGCAGCATTATTTCTTAAAGGGATACTTCAACCAAAAATGAAAACTCTGCTGTCATTTACTTATCGGAGTTGTTTCCACCTGGTCACATCATGTTTTATTTCTGATCAATTAGCTAATCTAATTACACTTGAGCACATAAATGTATCTCCCTTAAATTGATACAATTCCGATCTTTTAATCTCACACTATATAGTAATTTTACTGTTACGTCGACTAAAGCATCAGATACACTGCATTTTATTTAATTAAGATTATTATTTACAAAAACGTAAGCATTACATCTTATTTAGCATTCAAATTATTTTATATGCAGGCTTAAAAACAATATTACAACATCACAAGGCGGGCTTCATGATTATATTGATTATAGGCTATGGAACATATACACTTACCGGCCACTTTATTAGGTACACCTTACTAGTACCGGGTTGGGCCTCTTTTTGCCTTCAGATCTGCCTTATTCCTTTGTGGCGTAGATTCAACAAGGTTCTGGAAATATTCCTGAGATTTTGGTCCATATTGACATGATAGCATCACACAGTTGCAGAGTTGCTACAGGTTTGTCGCCAGAATTCGAGACTCATCAGACCAGGCCTGTGAGCCTGTGTCAATTCTAGCCTCAGTTTCCTGTTCTTTAGCTGACAGAAGTTCAGTGGTTTGAACTGCATGTCATTTAGGCATGTCTACCCTGCCTAAATGCATTGAGTTGCTGTCATGTGAATGGTTGATTAGAAATTTGCGTTAACAAGCAGTTGGATAGGTGTACCTAATAAAGTGGCCGGTGAGTGAATTTTTGTCATATAGGTACATGTAAGACATCATTCAAAACTGTAAAGGGTTTAAATTTATGTATAACATACTCTTTTAAAAAACAAAACAACTTGCCTTTGTAAACGAATGTAACACTACATTCTATTATTATTCCTCTCTTCACAGTGTTGATTTAATTTTTATGATTTCACAATTCAGTCAAAAATAAATGAAAAATAAAAATTAAAAAACTGTTGTCTGTGGCCTTTAGTGTATCTGATAGTCATATAGCCCAGTTTTTTTTTTTTTTTTTTTTTTTTAAGAGTGAATTTTACATATGTGGTTTTAACAACCAGATACATTTAGACCTGTCCAGCTTTGTGTGTATTGTGTCCTAGAACACCTGAAGTAGTTTAATTGGATTTTGTAGTCGGATTTATATCCGTCTCAAATGCATTTTGGAGGGTAATTATACCTGTTCTTTTCTCGATTGGGTGGCTTTCTAGTCAGAAAAAATGCGTTAAGTGACCAGGTGTAAGCAGTCCCATCCACTTTGAGTTGAATACAAAGGAAGATATTCTGAAGAATGTTGAAAAATCCAACCATTGTTTTTTTTTTTTTGTTTGTTTGTTTTTACTAATGATGTCAGTTTTTCCAACATTCTTCAGAATATCTTATTTTGTGTTCAACAGAAAAAAAATCATTAAAGTTTATGACCACTTGAGTGTAAGCGTGAGAGAATTATTACTATTATTATTATTATTGTTATTATTATTATTTTTCTGATGTACTACTATCACTAAAGCTTGGCATGAATTAGTCGTATTTTTTTACACAGTTAAAATAGTTTGGTTGTTAAATCACTTGTGATTCAAAGAAATTAGTTTTTTTCCAGTGATGTTTTTTACATGATGATTTTATGACATATACATGGCAAAAGATGAAAGAATATGAACACTTGAGGGGAGATGAAAAAACAAACATTGAATATTTTGATAACTTATAAATGATTGAGATTATTATAGCAGTATAACAGACTTTTTACTTGCTTAAAAAGTATAAACTAGAAGATGTGTAATAAGTCGTGTGTAATACAAATCGACAAGTATTTGAATTGTTGCTTGTTTAGCGCTTTATGAAATGATGACGTTTTAATTTCTATTTTTTTTTCTTGCTTTCTTTTAACTGACTCTAGTTTTATTGCTTTTCATGCTTACCTTGCATTCATTGCCTCTTGAGCAAAGCGGCAATTATGTGAAATAATATTATTTCACTTCAACATGCAAGCAACTATTGATCTCGTTTAGATTCAGCCCTTGGTTTAGAGTTCTGCATAAGGATAGCCTAACCTGCTTTATTATATCATCTGCAG
Seq C2 exon
ATATCTGCTTGAAAGAGGTGACCTCAATAGCAGACAGCCTTTATAATATCCAGCTGCTGAAAGAGTTTGCCAATGAGTACCTTAACAAAAGCTTCTATTTGACTCTTGAAGACCTGTTATATGCACCACCTGTGCTCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000035122:ENSDART00000147707:7
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0030726=CH=FE(29.9=100)
A:
NA
C2:
PF0030726=CH=FE(29.3=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]