GgaINT0125772 @ galGal3
Intron Retention
Gene
ENSGALG00000001692 | CAMSAP1
Description
NA
Coordinates
chr17:8892135-8892941:+
Coord C1 exon
chr17:8892135-8892276
Coord A exon
chr17:8892277-8892801
Coord C2 exon
chr17:8892802-8892941
Length
525 bp
Sequences
Splice sites
5' ss Seq
ATGGTATGT
5' ss Score
8.35
3' ss Seq
TGTCTTTCTTACCTTTCCAGATA
3' ss Score
11.89
Exon sequences
Seq C1 exon
GTGCGTTACCGAAGAGACCATCTGTCAAGCAGGCAATTACCTTACTTCCCTTTGCTCGAGGATTTGATGAAGGATGGTAGCGACGGTGCTGCTCTGTTAGCTGTGATACACTATTATTGTCCAGAGCAAATGAAGCTAGATG
Seq A exon
GTATGTAGAAAAGTTTCTTAGATAAGTATTTTGAAGTATTTGAGAGTTGAACTGGAAGTGAATTATCAAATGAAAAAGCAGCAGATGTAATAGGAGGGGGTCTGTAATTAAGCCTTAAAAAGAAATAAACGCATGTTACTGTTAGCTCACAATTCTTGTTGTGTTTGGCAGATGTATACAATTGAACTGCCAACCCTGTGTTATTTACAAATCTGGTTTTAGTTGCTTTTTTACTTTATCCTTGGGTATTGTTTGTAGCCTCTTTACCTTTTTGTGTGACAATGAAAATCATATATGGTTTGTAAAACAAACACCAAATTGATACTCAGTTGTGTGCACTTTTCCACTCCCTCCTTTTCCTGTCCTCTGGTATTTAATATGTAGAGAGAGGCACTGTTAGCCATTAAATATGAAGTGATGCTTTATAAGCACTCTGAAGTTCCTGTACGTAGTATTTCTGTTGGCTGTGGATGGAGGTTGAACTCGCTGGGGTAGTGCCATAACTTGTCTTTCTTACCTTTCCAG
Seq C2 exon
ATATTTGTTTGAAGGAGGTAACATCAATCGCTGACAGCCTTTATAATATTCAACTCTTGAGAGAATTCTCAAATGAATATCTAAACAAATGCTTTTATCTCACGCTGGAGGACATGTTGTATGCTCCTCTAGTTTTAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000001692:ENSGALT00000002593:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0030726=CH=FE(32.2=100)
A:
NA
C2:
PF0030726=CH=FE(31.5=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGCGTTACCGAAGAGACCAT
R:
AAAACTAGAGGAGCATACAACATGT
Band lengths:
278-803
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]