MmuINT0028484 @ mm9
Intron Retention
Gene
ENSMUSG00000026933 | Camsap1
Description
calmodulin regulated spectrin-associated protein 1 [Source:MGI Symbol;Acc:MGI:3036242]
Coordinates
chr2:25800654-25808339:-
Coord C1 exon
chr2:25808198-25808339
Coord A exon
chr2:25800794-25808197
Coord C2 exon
chr2:25800654-25800793
Length
7404 bp
Sequences
Splice sites
5' ss Seq
ATGGTGAGT
5' ss Score
10.13
3' ss Seq
TTCCTGTCTGTATCTACCAGATA
3' ss Score
8.56
Exon sequences
Seq C1 exon
GTCCGTTATCGGCGAGAGCACCTCTCTGCTAGGCAGTCACCCTACTTCCCGTTGTTGGAGGACTTGATGAGAGACGGCAGTGATGGCGCTGCTCTCTTAGCAGTGGTTCACTATTATTGCCCAGAGCAGATGAAACTGGATG
Seq A exon
GTGAGTGCAGAACACTTTCCCTGAACAGACCTGAGAGGGAACAGTGTGCATTTAGCATGCAAGAGAAGTAGCATGGAGTCCCTGTGTCAGTTGGGATACTACTATATACCTAGAAATTCCAAGAAACCAGATTCTTATTTGTAATCTGTATCTTAAGTGATAAAGAAATAGCCCATTGAGTATTGGATACTATGTCATTGTGTTTTGTGACTTTACCTTTGTTTGAGTATGAGTGGGGTTTAAATTCCTTCCTTATTGAAACATCTAGAACTTAAACCAGACAGGGTGGCACACACCTATAATCCTGGTATGTGGTCGGCTGAGTTAGGACCAAGACAAGCCTGGGATGCCTAAAGGAGACCCCTTGTCAGAAGCCAAAAGCAAAACAATTCTGTAGAACTTTGTGAAGACATGCAAATGAATGCTAGATTCAGTCTGTGTCCTGTCGTGACCTGATGGAGCACTATTCTGATGCCACAGTGCCTCTTTCTAGGTGCTGTGACTGACAGCAGGGAGGAGGGAAGTGGTTGGCTGTGAGGGCCACGGCACAGACCTGCCAGGGGATTATGAAGCTCGTGTTGTCAGTAGCTCTATTTCCTAAGTGCCTTGTGTCTGGAGTGGGCAGGTAGAAGGCCAGGGACCTGACCAGTTCTGATTGGAATTTTATCTCAGATTTTTAGCACTGGACAGCTTAGGCTGGTATTAATGCCTGTTCTAGGCATGAAAGTGCAGATAATACATTTTCTTTTTTACAGACACAGGTGGCTAGGGAGACCCCCAGGTTTCATGAGGATAAAACCTGCAGGTGAACAAATGGCTTCCTCACATTTGGCTGGCCTTGGTCCTGTGACATGGGGAAGTGTATCAGAAAAGCCCTAGCTTATACGAGGTGGCTTCTCAAGTACCCATGTCTCTGAGGACTAAGAGGAAGTGAGTGGGAGGGAGGCCAGCTTCACAAAATAAAAACAACTCTGGGGAAATAATTCAGTGTGGATAATTGCTTAGCTTGACTGAGACCTTGGGCTCTATCTCCAGCATCACACAAAAAGAAATGATACGGCCAGGCGTGGTGGCGCACGCCTTTAATCCCAGCACTCGGGAGGCAGAGGCAGGCGGATTTCTGAGTTCGAGGCCAGCCTGGTCTACAGAGTGAGTTCCAGGACAGCCAGGACTACACAGAGAAACCCTGTCTCGAAAAAAAAAACAAAAACAAAAACAAAACAAAAAAAAGAAATGATACACATCTGGGGATACAGCTCAGTAATAGAAGGCTTGCCTAGCAGACAAGCAAACGGCACTAGGTTTCTGCCCGAGCACTGAAAAGTAAAACTGGTTTAGTGCTAGACACTCAGGCCATGTAGGAACTCCAGAGTTCTGCTTGTGGGGAACATTTCAAGAAACCACAATTTCCAAGGAAACATGCTTCCATAGAACCCTCAGGTTTCACAGCAGGTGAAAGAGAATGCAGAATGCTTCTGAAGGACCTTAGGAAAGAAATAGAAGCTGTACGGAGGAGAGTTGGTGGGCACTTCATCCCAGAGTTGTGGGGGTTTCCCTTTCACTGTGCTTAGACTGACCTGGGGCTATAGGTGTTCCACACTGCCCTTGACCGTGTGTCCTGCTGCCTTAGCCTCTCAGAGTACTAAGCTCAGAGACATGGGCATCACTGCCCGCTGTGCTCTGGTAGCTCTCTGCCCCGAGTGCACTTTCTCAGTTTTCCCTCAGCTCCAGAGGTGGCCTGGTTTGTTTGCATGTTTGTTCCATAGTCTTGGCTGTCCTGGAACTCAGTATATAGATCAGGCTGGCCTCAGACTCAGATTCTCTTGCTTCTTCCTCTCAAGTGCTGGGATTAAAGGCATATGCCACCATGTCTGCTCTGTAGCCTGCTTTTACATCTGTCCTTTGAGCATCTTAAGGCAGACAGTAATATTACAAACTTGACAGGCTACATAGTGTACCAGATATTGTAGTACACTGAATAAAAATAAATGGTCAGGGCTATCAAGATGGGCCAGGGGGTGAAAGTGCTTATGCCAAGCTTGATAACCTGAGTTCAATTCTAGAACCTACAGGTAGAAGGGCAGAACTGATTCCTGTAAGTTGTTCCTTGGTCTCCATGTACACAAACCTTTGCAAAAAATGACCTTAGTGTTGTGGTACACACCTTTAGTGTCATGCACCCCCCTATCCCCAACACACACACACACACACACACACACACGAGACAGAGATAGGTGAAACTCTGATTTCAAGTATACACTGGTTTACAAAGCCAAGGCCAGACCAGTCAGGGCCACATAGTTAAGACCATGTCATGGTGGGGGCAGTCAATGGGGACGACAACAGCAACAACAAACTTGGTCAAAGCCACAAGAGAAACTACACCAGATCCCAAAGTATGTGTTCCCGCCAATTTAGCACATTACAAATCAGTCACAAAGGCACAGCTTCTATCCACACTCTTCCTAATAAGAGAAGTCAGCTGGTAGGTAAGATCTGTAAGAGTGGGAGCTTTTTATTTGTTTTCACTGATGTGTTACAACCATTTAAAGTGATATGTAGGACAGACCAATGTGGACTAGGTATTGAGCCAGTGAACAATAGCCAGAAGTGGGTAGGACACAGCCTGAAGCGTGCTGTAAGGGAGGTGAATGCTTTACATATGTGTGTCAGAAAGCAGGGAGCTTGGGCATTAATTAGATTCATTTCAGTATCTTACAAAAAAGGACACAATCCCAGAGAAAAGTAAAGGGAGAAAAAAATGAAGTTTTGTGACGGTGTCTGTAGAGCAAGCGACTGAATTGTAAGTTCCAGGCTCTAACAAGCTGGCTAGCCAAGAAGTAAAACAGAGGCAAAACAGTTCACCAGCTAGAATTCTGGAGCTGCCACAGGAAGACAGAAGAAGGCTTTTGGCCAGCAATTATGCCTAGGTGTGTCTTTGTAAGTCAGTCTCAAGAACTGTGAGAGCCTGGATTCTTCCTTTGCTTCCAGTAATAGCCTCCATGTCCAAAGATAGGGATATAAACACACTTGGGGAGACTAAGCCTGTAAGTCATGGCCTCAGGCTCCGCGTGGGGTGGGTAGGAGGAGGTGACCAGAATCAAGGCTTCTGTGTGCGTCTCTTCATCCTGTACTTGTAAGCCTCAGTTCTGTGCTCCACATGCAAAGCAGGCACAGAGTCTTCTCTCTAGAGACTGCTCTTAAGGATAAAAGCCACAGTGACTGAGGTTTGACATCAGCTGGCTTCTTGCCTTGGTCACCTGCAGCAAAACCCACTTCTTAATGCCTCCCTCTAACAGTGAAGGGGTACCCAGGTCCCCCTGAACATTTGAGGAAATCCCCTGGCCATAACAAATACTCAGACAACAGATAGAGTTCAGAATACACAGCACCAAGAGGCCGGGGACCTAGTTGCCAAGAACGGTGACTGGAAAGAGGCATCTTAAAAACTGTCTTCCTGGTATGTCCACGTTAGGTTCTGTAGAGCTCTGAGGAAGTAGGCATTTTGGTATCTAAAGTGTAAGAGTATACTAAAGAGTTAGAAGGCTGAGTAGAAAAAAAAAAAAAGGAATCTTCCAGAAAATAGAACAGAAAGAGCAAAAGCATGGAAGTAAAGGAAAACTAGAAAAATGAAATCAATATAGGAGAATGAACACAGAAAATAGAGATGGTTTACCAAAGGAAAGTGTAGACGCCTCTTGGGTGAGCACAGCCAGATTTCAGGAACCCACTGGAAGTGTCCAGTTGAAGGACTATGGTGTATACTGAGAAGACTCCAAAGCACTCTGTGGGGAGACAAAGCAGGTCACACAGAGTAGAGGACTGTATGACAGCAGCAGGTCTCAGCACGGCTGGCTGCTTTCTAACAGCCTTGCCTCTGCACTCCAGCTTGCTGGAGAAGAGGCTACACAGAGCACTTCAGAATCTTTGTGCAGTTTAGAAGACATTGTATCTTGTTGAAATAAAAAGTAAAAAGTATATTTAGTAGGAAAGTAATAAAACAGTTAGACATTTTGCAGAGAAACCATGTAAAGTTAGAAGCTGGTTTTTGTTTTTGTTTTTGTTTTGATGGATTCATTAAACAGATACATGTTTGGATCGATCAGACAATAAAAGAGAGCAAAATAGAGAATGCAGAAAACAGGCAAGGTGTGGTGGTGACCCATGTCTTTGATCCCAGCTCTCAGGAGATAGAAGCAGTCAGATCTACTACAGAGAGTAAGTCCAGGACAGCCAGGGCTCCGTTAACACAGAAACCCTGTCTAGGTGGGGAAAAAAAGCAGAAAACAAAATGGCATAAATGGAGGTCTAGTAGAAACCAAGTAAAAATATGGAGAGTATTTTGTGTTGTTTATTTCACTTGTTATATGACACAGATAGTTCTGTGTTGGAGAAAAAGGAATGAGAGAGCCGGAGACCCATAAGTACAAGACAGATGGACTCAGGCATCAGGAAGTGCATCCTCCTGGGCTGACTTCCTGTGGGAACTTTGTGCTGGAGCATTTACCAAACTCTCAAAGAGGAGGACCCCTGGTGGTGCTAGCCCACTATGCAGTACATGAGTCTCATGTGGACCGCAGCTTGGGGAGAGCCAGGTAACCCAGTCAGTAAAACGGGGTGTGAGAAGAAAATGTGAATATATAAAAAGTTAAAAACTGCAAGAAAAAAAGTCCTAAACATCCCTGTAGTTCTTGGAAGAGGCTTCACATTCTCAGATGTGGAGTCAGAATCACTAAAATCATCATTTCTTGTAAATATATTGCCAGTCCAGTAAATACTTTCGCTTTTACCAAGATTGATAAGGCAATATAAGGGCAAAATTACAACATTTTACTTTGGTATAAATTTAATATATAACAGCTCCAAGAATTTGTTTTTTAAAGTCTAGCCTTCCCAGGGCAATCCTTTCTCACTTTTGTCTTTGGAGTAGCTCAGGGACCAAAGGCTTTCCTGGCAGCACTGCTATACGCAGTGTACGCTCAGGGGAGGTCCAGGGATGTCTTTTCACCCCTACTCACCGTTTGTAGTTGTTGGGGCTTGCAGTCTCCCTAAAGCCATAGTGTCCACCTAGCCTTTGCCATTCATGGTGTTTAGGCTATGGAGTTGGTCTGTTGTCCCTTGCTTGGTGGTTAGTTGGCTTACTGTTTCCTTATGATTTGTCTGCCTCAGGCTATACTGCACACCAGTATCTGTGTCTACTGTGCTCTTGGTCAAAACGCTGTGTGCTGGCCGCTTAAGACCACTTGAGAAAGGTGATTTTTACTGATGAACTGACTCCTAGGGAGACCTTTGGACTTTGGATCTTCGGTTATCATCTGCTTCCTCATCTGATTTTCACCACTGAGTGTCCCTCCTCGTTCCTGTTTGTTGTTTCCTAGCTGGCATTGTGCAGGGGTAGCTTTGTCCTCTTCCTGCCAGCATGTTTGTTGATTGACAGACTGAACTCACATTATAATCTTATCACCTGGTAGCTTGTGTCTGGTTCCATCTATCTCAGAGACTTGTACTTGGTACTTAGTTCTCACAGATTTTAGCTGCATTTATTTGTTTGTTTGTTTATTTATTTATTTATTTAGAATAGAACATGGGGCCCTTGTTCTACAAGTGTAACATTTTGTTTAGCTTTACACTGGCTGAAACTGTGGCATTGGCTCAGGGCAATCAATAGAGCAGGAATACACAAACCACGGAAAAAGAGATGGTCAGTCAGAGCTGTGCATTGAGGGGTCACATACCCATACCATAGAGGGCAAGGGAGGACTGGGCAGTCAGGAGTGGTGGCAAACAGCGCTCCATGGTCAGATGACAGACACTACCTCCTGTGACATGGGCACACCTGCTCCTGGACTGATGACCTAGACTGGAAATAGCAATTGAGATCTTTGAAAAATAATCCCCTCAAACCCTCCCCCTCTTATTTTGGTACTCGAGCATGCTAGAGAGATAGCCTGCCTCCCTCCTGTTTTCTTTTTGGTTTTTCGAGACAAGGATTCTCTGTGTAACAAGATCTAGCTGTTCTGGAACTCACTCTGGAGACCAGACTGGCCTTGAACTCAAAGATCTACCAGCCTCTACCTCTGGAGTGCTGGGATTAAATGTGTACACCACCCTCTTGGCTTCTCGTTTTTAAAGGTGGAACATTCAGAGGCAAAGCCTTGGTGCATCTGTCTCATGATCTTACATTTGCTGTTTACTGGCATCTGGACAAACCCCGGAGGCCCCTTTTCAGGGGTCCTTATTTACTGCCTGTACCACATTTTCCAATGGAGCATCTGCCCTCCTGAATTTTCTTACCTGAGAGGTTGGGAAGAGCCTCACCTCTCATAGAGGAGGCTTGTACTTGGTGTAGTTTTCTCTCTTTCTCTCTTTCTCTTTCTCTTTCTCTTTCTCTTTCTCTTTCTCTTTCTCTTTCTCTTTCTCTTTCTCTTTCTCTTTCTCTTTCTCTCTCTCTCTCTCTCTTTCTCTCTTTCTCTCTTTCTCTCTCTCTTTCTCTCTTTCTCTCTTTCTCTCTCTCTGTCTCTCTCTCTCCCTTTCTCTCTTTCTCTTTTTGTTTTGGGGTAGTTTTTTTTTTTTTTTTTTTTTTTTTTTGGTTTTTCGATCAGTGTAGTTTCTTGATTTGGAGGATTAGAGACATTGCTTGACAATTATAATTTTGTGCATATCCTATCTCCTGCCATTTGCAAATATGTCTCTGCTTGTGGAAGAAAATGCAAACATTTCCATACATTTATTTTAATAGTATTGTGTGTGCATGCATGTTGTATGTATGTGGGTGTAGCCACAGATGTGGATGTGAAAGGTTATCTTTTTGGAAATGGTTTTCTCCTACTTTTTTTTTTTTTTTTTTTGAGACAGGGTTTTATACCTGACTGTCCTGGAACTTGCTCAGTAGACTAGGCTGGCCTGGAACTCCTCAGAGATCTGCCTGCCTTTTCCCCTTGGGATTAAAGGTGTGCACCACCGTCACCTGGCTGTTTCTTCCCACCTTTATGTGAGTCCTGGAGATTGAATTTAGGTTGTTGAGCTTGCAGGGCCAGAGCCTTTACCCATTGAGCACTGAGGACCCAGAACACTGAGATTTCTCATTTTGCTCATCTTTGCCTGCTCTTGTGCCTTGCACATGTTAGGCAAGTGCTATGCTACTAAATTCTAGTTCAGCCCCTCTGTTCACTTTAGGACTTCAGCCTTGAACTCTCAAATGATCTATGTTGTGAATACAGAGTACTTTACATATTTTCTTTTTCCTTTTAGTGTCACCTATGAAACTTACTGTCTTTTAAACTCTCTTCACCTTGCTTCCTTTATCACCAACCCTTTTACATAGAATTTCAGTTTTGTGTGTCTACACACACCGGTGTGAGCACACTACGCGTGCCATAACAGTTTCCTGTCTGTATCTACCAG
Seq C2 exon
ATATCTGTCTGAAGGAGGTGCCATCAATGGCTGACAGCCTCTATAACATCCGCCTTCTGAGGGAGTTTTCCAACGAGCATCTGAACAAGTGTTTCTATCTCACGCTGGAGGATATGCTGTATGCCCCCCTAGTGCTGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026933-Camsap1:NM_001115076:5
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.008 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF119713=CAMSAP_CH=PU(48.8=85.4)
A:
NA
C2:
PF119713=CAMSAP_CH=PD(50.0=89.4)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: