RnoINT0028771 @ rn6
Intron Retention
Gene
ENSRNOG00000017883 | Camsap1
Description
calmodulin regulated spectrin-associated protein 1 [Source:RGD Symbol;Acc:1565022]
Coordinates
chr3:3391377-3399615:-
Coord C1 exon
chr3:3399474-3399615
Coord A exon
chr3:3391517-3399473
Coord C2 exon
chr3:3391377-3391516
Length
7957 bp
Sequences
Splice sites
5' ss Seq
ATGGTGAGT
5' ss Score
10.13
3' ss Seq
TGCCTGTCTGTATCTACTAGACA
3' ss Score
6.71
Exon sequences
Seq C1 exon
GTCCGCTATCGGCGAGAACACCTCTCTGCTAGGCAGTCACCCTACTTCCCGTTGTTGGAGGACTTGATGAGAGACGGCAGTGATGGCGCTGCTCTCTTAGCAGTGGTTCACTATTACTGCCCAGAGCAGATGAAACTGGATG
Seq A exon
GTGAGTGCAGAACACTTTCCCTGAACAGACCTGAGAGGAAGCAGTGTGCACTTAACATGCAAGAGAAGTAGCATGGAGTCCCTGTGTCAGCTGGGACACTACTACCCCATTCCTAGAAATTCTAAGAGACCAGATACTTACATGTAACCTGTACCTTATGTGATAAAGAAATTGCCCATTGAGTATTTGGATAATATGACATTGTGTTTTGTGACTCTCCCTTTGTTTGAGTGTGAGTGGGGTTTAAAATCCATCCTTATTGAAGCATCTAGAACCTAAGCCAGACAGGGTGGCACACACCTCTATCCTGGTATATGGTAGACTGAGTTAGGACCAAGACAAGCCTGAGCTGCCTAAATGAGACGCCTTGTCAGAAGCTTAAAGCAGAACAATTCTGAACGTTCTGAAGACATGAGAATGAATGGCAGATTCAGTGTGTGCCCCGCCTTGGCCTGATGGCGCACTGTGCTGACACCACAGCACCTCTTTCTAGGTGTTTGTGACCTGCAGCAGGGAGGAGGAAAGTGGTGGCTATGAAGGGCATGGCACAGGCCTGCCAGGGCATTGTGGAAGCTTCTGTTGTCCACGGCTCGATTTCCTAAGTGCCTTGGTCTGGGGCGGGCAGGAGGACGGCCAGAAACCTGACCAGTTCCTGTGTTGGGATTTTACCTCAGACTTTAGCACTGCAAAGCTAAGGCTGGTATAATGCCTACTCTAGGCATGCAAGTGCAGAGAATACATTTCCATTTTTTACAGACATGGGTGGCTTGAAAGACAGGGGGACCCCCCCCCCTTCCAGGAAGATAAAACCTGCAGGGGGACCCATGGCTCCCTCACATTCAGCTGGCCTTGGTCTTATGACTAGGACATGGGGAAGAGAGTCAGAAAAGCCCTATCTTACATCTTACATCCAGGAGGCTTCTTAAATACCTGTGTCTCTGAGGACTACGAGGAAGTGAGTGAGAGGGAGGCCAGCTCCACAAAATAAAACAGGACAACTCTGGGGAAATAACTCAGTGATAGAGAATTGCTTAGCCTGACTGAGCTTGGGCTCTATCTCCAGCGTCACACACTCACAAAGGAAGAAATGTCATGTGTCTGGTGGGTGACACAGCTCCGTACAGCTTGCCTAGCATGCAAATGGCACTAGGTTTCTGCCCCAGCACTGAAAAGTAAAGCTGGTCTAGTACTAGTACACTCTGGCCACGTAGGAACTCCCGGGCTCTGCTGGTGGGAACATCTCAATTCCCAAGGAAACATGCGTCCATGGAACCCTCAGATTTCACAGCAGGTGGAAGACCGTGCAGAATGCTTAGCCTCCCGAAGGACCTTAGGGAAGAAACAGAAGCTGTGAGGAGGAGAGTAGGCGGGCCTTTTCCCTCTTCACTGACCTGTCCTACGCTGCCCCTGAACAGCGCTCCTGCTGCCTCAGCCTGCAGTGCTGAGATCAGAGACGTGCACACTGCCCGTTGTGCTCTTCACACTCTCCGCTTTGAGTGCCCTTCTCAGTTTAGCCTCAGCTCCACGTGGCCTGTGTTGTTTGCATGTTTCTTTGCTTTGAGACAGGGTCTCCTTCCATAGCCCTGGCTGTCCTGGAACTCAGTATGTAGACCAGGCTGACCTCAAACTCACAGAAATCCTCCTGCTTCTTCCTCTGGAGTGCTGGCATGCACCACCATGTCTGGTCTGTACCCTGCTTTTAAATCTGTCCTTTGAGGATCTTAAGGCAGATAGTAAATAATATTGGGGTTAACATCCTTACTGAAAAAAAAAAAAAAAAGACAGAATTATGTGAAGAAGTTGACAGGCCACGCTGTCAGAAGCAGGAATTTAGTCAGGCCATAGAAAGCTTGAATACAAACTTGTCAGGTGGCATTTAGTGTACCAGATATTGTAGACACTGAATAAAAATAAATGGTCAGAGCTGGCAAGATGGGCTAGGGGGTTAAAGTGCCAAGCTTGATGACCTGAGTTCAGTTCTAGAACTACAGAGTAGAAGGACAGAACTGATTCTTGCAAGCTATTTCTTGGTCTCCATGTATACAAACATTTGCAAAAAATGGCCTTAGTGTTGTGGCACACACCTTTAGCGTAACACCCCACCCCCTACTTCTCACCCCTCACCCCCATATTAGGAGACGGAGATCGGTGGGACTCTGAGTTCAAGGACATGCTGGTTTACAAAGCAAGGTCCAGGCCTGTCAGGCCACAAAGTTGAGACCATGTCTGGGAGCTGGGGGCCGGGGGTGGGGGTGGGGGTGAGAGCAACAACAAAAACTTGGTCAAAGCCACAAAAAGAGAAGTCAGCTGGTGGGTAAGATGCTGATATGTTAAAACCATTTAAAGTAATATGTAGGCCAGACCAATGTGAACTAGGTATTGAGCCAGTTAACAATGGCCAGAACTGTAGGACACAGCCTGAGCGTGCTGTAAGTCACAAAGCAGGAAGCTTGGGAATTAATGAATAAGATTCATTGCAGTGGTTTTAATAAAGGACACAATCCCAGAGAAAAGTAAAGAGAGGGAAGATTAAGTTTTGTGACTGTGTCTGTAGAGCCAAATTGTAAGTTCCAGGCTCTAACAAGCTGGCCAGCCAAGAATTAAAATAGAAGTACAGAGGCAAAACAGTTCACCAGCTAGAGTTCTGGAGCTGCCACAGGAAGACAAGATTTTGACCAGCAGTCATGCCTAGGTGTGTTTTGGAAGTTAGTTGCTTCCAAGAACTAGGGACATGAACACACATGGGGCAAGACTGAGCCTGTAAGTCATGGCCTCAGACTCCAGCAAGGAGCAGGTAGGAGTGAGGTGACCAGAATCGAAGCTTCTGCGTGAGCTTCTTCATCCTATACTAGTAAGCCTCAGTTCCTTTCTGGGCTCCATAAGGGTGATATGCTCACATGCAAAGCAGGGACGGAGTCTTCTCTTTGGAAACTGGTCTTAAGGACAAGATCGCAGTAGCTGAAGTTTGGCATCTGCTGGCTTCCTGCCTTGGTCATCTGGGCAAAGCCCACTTCCTGATGTCTCCCTCTAACAGTGAGGGGTGCTCTGATCCCCCGACATTTGAGGAAATCCCCTGGCCATAATAAGTACTTAGGCCACAGATACAGTTCAGAGTACACAGCAGCAAGAGGCCGGGGACCTAGTTGCCAAGAACAGTGACCAGGAAGAGGCATTTAAAAAACTGTCATGTGGAATGTCCACATTAGGTTCCGTAGAGCTCCGAGGAAGGAACATTTTAGTATCTAAAGTGTAAGAGTGTACTAAAGAGTTAGATGGCTGAGTAGAAAGAAAGAATCTTCCAGAAAATAGAACAAAAAGAGCAAAGGTGTGGAAGTAAAGGAGACACTAGAAAATGAAATCAATATAGGGGGATGAACAGAGAAAATCGAGGTAATTTACCCAAGGAGAGTGTAGATGCCCCTTGGGTAAGCATAGCCAAATCTTAGGAATCCACTGAGGAGACTCCAAGCAACTTGGTGGGAAGACAAAGAAGGTCACACAGAATAGAGGACTGTATGACAGCAGCAGATCCCTCGGCCAAATCCTAGACACAGCATGGCTTGCTGCTTTCTAACAGCCTTGCCTCTGTACTCCAGCTTGCTGGAGAGAGGCTACATAGAGCACTTCATTATCTTGGTGGCGTTTAAAAGACATTGTATCTTGTTGAAATAAAAATTTAAAAGTAAATTTAGTAGTAAAGTAATGAAACATTTAAAATCATTTGAAGAGACACTGTGTAAAATTAAAAGCTTTTCTTTTGATGGATTCATAAAACAAATAAATTTCTTGACTGATTAGTCAATAAAGAGGGCAAAATAGAGAATGCATAAAACAGACCGGGTGTGGTGGTGGCACACGCCTTTGATCCCAGCACTCAGGAGGTAGAGGCAGTCAGATCTTTGTGAGTTCCAGGCCAGCCGAGTCCAGGACAACCAAGGCTCCGTTAACAGAGAAACCCTGTCTTTGGAGGTGGGGTGGGGAAGCAGAAAATAAGATGGCATAAATTCAGGTCTAGTAAACACCACATAAAAATATGGAGAGTATTATTTTGTATTGTTTATGTTCACATGTTATATAACACTGATAGTTCTGTGTTGGAAAACCGGAATGGGAAAACTAGAGACCCGTAACTACAGGGCAGATGGACGTGGGCATAGGCATCAAGATGTACATACTCATGTGCTGACTTTTTTTTTTTTTTTTCGGAGCTGGGGACCGAACTCAGGGCCTTGCGCTTGCTAGGCAAACGCTCTACCACTGAGCTAAATCCCCAACCATGTGCTGACTTCTTGTAGGAACTTTTTGCTGGGGCATTTTACCAAACTTTCAAGGAATTGACAGTTTCTATGGTTTATAAATCGTGCCAAAGAATAGGGAAGATGGAATGCTTCTAGTAATTTTATAAGAGGATTATTCCTGACACAGTGGAAAGAGACCTACAGGTGACAGTTAAGGCTGGCTTGCCTTGTTAGCACAGATTGAAATCTTGTATAAAATGTTGGAAGAAAAGAATCTAACTATTGCATCTGCTTTTACACAACTGGCTCAGTAGGTGTCATTCTTGACCTGCCAGTGATGTAATTTTACCTGGTGGTAGGTGTGGTCCCCAGGCTGTCACAGATGGGGGGACCAAAATAAGACCAGGAATAGTATTTTGTGTCATGTAGGGTGTCTAGTCAGGAGGCCTCGTGGGCTGACTTCTTGTGGGAGCTTTTTGTTGGGGCATTTTACCAGACTTTGAAGAGGGAGAAACCCTGGTGGTGCTATCCCAGTATACAGTCAGACATGAATCTCTCCTGGACTGCAGCTTGCTGAGAGCCAGGTAATCTAGCCAGCAAAAACAGGATGTGGAGAGAAAAGGTGAATATGTAACAAGTTTAAACTGCAGGACAGAAGTCCTGAATGCTTCTGTAGTTCTTAGATGAGGCTTCGCGTTCTTGCATGTTGAGAGTCAGTCTCACTAAAATAATAATTTCTTGACTGTTCTATAAATATATGGCCAGGCCAATAAATACTTTTGTTTTTTTAACAAGATTGATAAGGCAACATAAGGGCAAAATTGTAACATTTTACTTTGGCATAAATTTGATATGTAGCAGATAGCTCAAAGAATTTGTTTTTAAAAATCTCATCTTCCCAGGGTAGGATCTTTCTCACTTTTGTCTTTGGAGTGGCTTAGGGCCCAGAGGCTTTCCTGGTAGCGCTGCTGTCTGCAGGGTCAGGGAAGATCCAGGGAGGTTTTCAGCCCATGCTCATCATCGTTGGTAGTTGTCAGGCCTTGCGACCGGTCTCCCTGAAGCCACAGTGTCCACCCAGCCTTGGCCGTTGTTGTATTGTAGGCTGTGGAGTTGGTCTGTTGTCCCTTGGTTGGTGGTTGATTGGTTTGGTGTTTGTTTATGATTTGTCTGCCTAAGGCTACACCGTGCACCCCAGCATCTGTGTCCACTGTGCTCTTGGTCAGGGTGGTGTGTGCTGGCCTCGTAGGGCCGCTTGAGAGATGTGATTCCTACTTCATGATGAGCGGACTCTGTGGGGAGAGCTGTAGGCTCTGGATCTTCAGTTGTCATCTGCCTCCTCATCTGATTTTCACACTGAGTACCTGCCTCATCCCTGCTTGTGGCAGGGGTAGCTTTGTCCTCTTCCTGCCACCATGTGTTTGTTGAGTGACAGATTGAACTCACAATCTTTTTTTTTTTTTAAAGATTTATTTATTTTATTTATATGAGTACACACACCGTCACTGTCTTCAGATACACCAGAAGAGGGCATCAGATCCCATTACAGATGGTTGTGAGCCACCATGTGGTTGCTGGGATTTGAACTCAGGACCTCAGGAAGAGCAGTCAATGCTCTTAACCGCTGAGCATCTCTCCAGCCCCCTGGACTCACAATCTTAATCACCTGGTAGGCCATGTCTGATTCCATTTCTCTCATCAGACTTGTACTTGGTGTTTAGTGTTCACAGATTTTACCTGAATTAATTAATTCAAAAAATTAAATTTTTTTTTTTAAAGAATAAGAACATGGGGGGTTGGGGATTTGGCTCAGTGGTAGACAAGCGCAAGGCCCTGGGTTCAGTTCCCAGCTCCAAAAAAAAAAGAATAGAAAAGAAAAAAAAAGAATAAGAACATGGGGCCCTTGTTCTACAAGTGTTACGTTTGTTTAACTTCATGCTGCCTGAAACTGTGGCATTGGCTCAGGGCAGTCATTTGGAGCAGGAGTTTACAAACCATGGAAAAGGAGGCATTCAGTCAGAGCTGCGTGTTGAGGGGCCACATATCCTAGAGGGCAGTACAGGACTGGGCAGTCAGGAGTGGTGGCAAACACTGTCCCATGATCAGATGACACTACCTCACTTGACGTGGACACACCTGTTCTTGGACTACTGAATTAGCATTTGAGATCTTTGAAAAAGAAAATTTCCCCCTTATTTTGGTACTTGAGCATGCTGGACAAACACTCTTCTGCCTTCCTCCTTTTTCCTCTTTTCTTTTCGTTTTCTTTTTGGGTTTTCGTACACAAGGATTCTCTGTGTATCAAGCTCTAGCTGTCCTGGAACTCACTCTGGAGACCAGGCTGGCCTCGAACTCAAAGATCTACCAGCCTCTGCCTCCTGAGTGCTGAGATTAGAGGTGTACACCACACTCCTGGTTCCTCTTTTTTAAAGGTGGGACATTCAGAGGCAAAGCCATGGTGCATTTGTCTCATGATCTGAACATCTGCTGTTCACTAGCTCCTAAGGACCTGGACCCCACACAGGAGGCTCCTTTTCAGGGTCTGTACCACAGTTCCCAATGGAGGATCTGCCTCCTGAATTTTCTTGGCTGAGAGGTTGGGAAGATCCTCACCTCTTCATAGCTCAGAGGCTTGTACTAGGTGTAGTTTCTTGATTTGGAAGATTAGAGGCAATTGTAATTTTGTATATATCCCAGCCCCTACCTTTTCAAATATGAAATTAACTTTAGGCAGAGGTCTCTGCTTGCCGAAGAAAATGCAAACATTTTCTTACATTTATTTTAATATTATTGTGTGTGCATGCATGTTGAATATATGTAGGTATTGGCACCAATGTGGATGTGAAAGGGTATCTTTTTGGAATGGTTTTCTCCTACTTTCTCTTTTTTTTCTTTTTCTTTTTTCTTTCTTTTTTTCTTTTTTTTTTTTTTTTAGACAGGTTTTCTCTGTGTATCCCTAGAACTTGCTCAGTTTACTAGGCTGGCCTGGAACTCCTCAGAGATCTATCTGCCTGCCTTTGCCCCTTGGGATTGAAGTGGTTCACCCACCATCACCTGGCTGTTTTTTCCTATCTTGATTTGAGTCCCGGGGATTGAACTTAGGTTGTTGGGCTTGCAGGGTGAGAGCCTTTACCCATTGAGCTGTCTTGTGGACCCAGAACACAAATATTTCTTTTTTATTTTATTTCTTTTTTATTTTTTTTTTAAAGATTTATTGTATGTGAGTACACTGTCGCTATCTCAGACACCAGAAGAGGGCATCAAATCCCATTACAGATGGCTGTGAGCCACCATGTGGTTGCTGGGAATTGAACTCAGGACCTCTGGAAGAGCAGTCCGTGCTCTTAACCATAGAGCACCCCACAAATATTTCTAGAAGGTGATTCCACAGTTGATTTTGCTCATCTTTGCCTGCTCTCCTGCCTCGAACACGTTAGGCAAACACTCCGCTCCTACACTCTACTTGCAGCCCAGTGCGGTTCACTTTAGGACTCCAGCTTGAACTCTCGAATGATCTATGTTGTAAATGCAGTCTGGAGACTGCATATTTTCTTTCCCCTTTTAGTGTCACCTGTGAAGCTTACTGACTTTGACAATCTTTTGACCTTGCTTCCTTTATCACAAATCCTTCCACGTAGTTTCAGTTCAGAATAGTGTATCTACACACTCCCTTGTGAGCACAATATGTGTGTCATGACAGTCTGCCTGTCTGTATCTACTAG
Seq C2 exon
ACATTTGCCTGAAGGAGGTGCCATCGATGGCTGACAGCCTGTATAACATCCGGCTTCTGAGGGAGTTTTCCAACGAGCATCTGAACAAGTGTTTCTATCTCACCCTGGAGGATATGCTGTATGCTCCCCTAGTGCTGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000017883:ENSRNOT00000024163:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF119713=CAMSAP_CH=PU(48.8=85.4)
A:
NA
C2:
PF119713=CAMSAP_CH=PD(50.0=89.4)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]