HsaINT0032834 @ hg19
Intron Retention
Gene
ENSG00000241322 | CDRT1
Description
CMT1A duplicated region transcript 1 [Source:HGNC Symbol;Acc:14379]
Coordinates
chr17:15501846-15508737:-
Coord C1 exon
chr17:15508537-15508737
Coord A exon
chr17:15501968-15508536
Coord C2 exon
chr17:15501846-15501967
Length
6569 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGG
5' ss Score
10.07
3' ss Seq
TTTTGGCCTGATTCCTGCAGATA
3' ss Score
8.44
Exon sequences
Seq C1 exon
GTGGGATCAAAACCGAGTCATCCACTATTCCGGGGGAGATCTGATAGCTGTGTCATCTAATCGAAAGATCCATCTTCTGGACATCATACAAGTGAAAGCGATACCCGTTGAATTCCGAGGCCATGCTGGGAGTGTCCGGGCCCTCTTCCTGTGTGAGGAGGAAAACTTTCTCCTAAGCGGGAGCTATGACCTAAGTATCAG
Seq A exon
GTGAGGAGTCCAAAGACATCATGATCCCTGTCCCACCTAGGGCCTAGAGGCAGCTCATGGAAGAAGTGTGCATGCTTCTTCTTTTTATAGTTAACAGTTTTCCTAGAAGATACTGACTTCTAGAATACCTTCAGCTTATTTTTTTTTTGGCAAGGAAAAAGTCAGGAATGTATATATTGCTTAACATTTGAATGAGATGGATTTATAACAGTTATCAGATATATTTTCTAATTGATGACTGCAAATCAGAAAAATTTTCTTTATTAGCATTCTTAGAGGAAGAAATAATTTACATTTGTTCTTACAGATTCTTTCAGGGGAACGTGGTTTTTTATGGGTTTGAGACAGACTATAGAGGCAAAATAGTGCTTTAAAAACACATATGTGGCCAGGCGTGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGTGGGCGGGTCACGAGGTCAGGAGATCAAGACCATCCTGGCTAACATGGTGAAACCCCGTCTCTACTAAACAAAATACAAGAAATTAGCTGGGCGTGGTGGCGGGCACCTGTAGTCCCAGCTACTCGGGACGCTGAGGCAGGAGAATGGTGTGAACCCGGGAGGTGGAGCTTGCAGTGAGCCGAGATCGCGCCACTGCACTCCAGACTGGGCGACACAGCAAGACTCCATCTCAAAAAAACCCAAAAACAACCACATATGTATATTTTTAAACAATATAACAAACACTCATGCGTCCATTACTCAGGCCAAGAAATAAGATACCACCATTCCCTAACCCTCCCACTGTGCCCTTCTCTTCTTGCTTCTTCCTGCCAACCAGAGGTAATATTATTCTAATTTTATACTAATGATTCCCTTGCATTTCTTTATCATTTTTGCTTCCTTCTTATACATCTCCAGAAGTATTAGTTACTTGTGCCTGTTTTTGAACTCAACATAAAAAGAATCATATTTTAAAAATTTGTTGGTACCTCATTCTTACATGGAACTATGTTTTTGAGATTCACCTATATGATGCAGGTGGCAGTAATTAACTTATTTTCACTGAGATACTGTATTAAATTGGATGATTGTATCATAACTCATTTATTTGTTTTTCTGTTGGTGGACATTTGCATTGTTTCTAGTTTTTGTTTTTTTTTTTTGAGATAGAGTCTCACTGTGTCACCCAGGCTGGAGGGCAGTGGCGCCATGTTGGCTCACTGCAAGCTCCGCCTCCCAGGTTCACACCATTCTCTTGCCTCAGCCTCCCAAGTAGCTGAGACTGCAGGGGCCCGCCACCACACCAGGCTATTTTTTTTTTTTTTGTATTTTTTAGTAGAGAAGGGGTTTCCCCGTGTTAGCCAGGATGGTCTCGATCTCCTGACCTCATGATCCACCCGCCTCGGCCTCCTAAAGTACTGGGATTACAGGTGTGAGCCACCGCGCCCAGCCCTTGTTTCTAGTTTTTAATTATTTCAAAGAATGCTGCCAGAGACGGGTCTTGGATGTGTCCCCTGGTGCCCATGTGCATGAGTTTTTTAAAGGTATATTCTTAGTATGGGAATTTCTAGGAAGGAGTACTAAACTGTTTTCCAATGTGGTTGTATTAATTTACATTCCCATTGGCAGCATATGAGAATATCTCTTCTTATATATTCTCACCAACACTTAATATTGACAGTCTAACAGTTTTGTCAATCTGATGGGTATTAAATAAAACCCACTGTGTTTTATTGGGGTTTAAATTTTAACTTTCCTGATTACTAATGAAGTTGAACACCTTTTCATATGTGTATTAGTCAGGGTCTCCAGAGAAACAGAACCAATACAATGTGTATATACATAGGAGATTTACTATAAAGCATTGACTTGTGTGATCAAGGTGGCTGGCAAGTCCAAAATCTGCAGTGTGGGGCCAGCAGGCTGGAGACCCAGGAGAGCCAACGGTGCAGATGAAGCCCAAAGGCCATCTGCTGGAGAATACCCTCTTGCCAGGACTATCTATTAACTTTGTTCATAGTATCTACATGAATTTTGTTGAACAAAAATTCTCAATATGGGCCAGGCGCGGTGGCTCACGCCTGTAAGCCCAGCACTTTGGGAGGCTGAGGCAGGCGGATCATCTGAGGTCGGGAGTTTGAGACCAGCCTGACTAACATGGAGAAACCCCGTCTCTACTAAAAATACAAAATTAGCTGGGCATGGTGGCACATGACTGTAATCTCAGCTACTCAGGAAGGCTGAGGCAGGAGAATCACTTGAACCTGGGAGGTGCCACTGCACTCCAGCCAGGGCAACAAGAGCAAAACTCGGTCTCGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGGTGAAACCCCGTCTCTACTGAAAATACAAAAAATTAGCCGGGCGAGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGTGAACCCCAGGGGGCGGAGGCTGCAGTGAGCCGAGATTGCGCCACTGCACTCCAGCCTGGGCGACAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAAAACTCGGTCTCAAAAAAAAAAAAAAATCTCAATATGAATGTAATAAAATATCAGTTTATCAGGGTTTTTTTTTTCCTCATTTCTGTGATTCTTCCCTCTTCTAGGTCACAGAGATATTTTCTAATATTTTCTTCTATCAACATTACAGTTTTATCTTTTGCATTCAGTTTTTTAATCTATTTGCAATTCAACCTTGTATGTGGCGTTAGGTAGAGTTTCCATTTCATTTATTCATAAATGAATAATGTGAGCAGTTTCTCCCCCACAGCAACTACTATATAACCTGCCACTTCCTCCATTGATTTGAGGTGCTATCTTTATCACATGGAAATTTCCCATATGTGCATGAGAATGTCCCTGAGCTCTCTGATCTAGTCCACTGTCTTTCTGTTTTTAATCAAAATCCCCCTCCTTGAAAACTGTTTGTTTTGTTTTTAGGTATGCATTTGGAGAATGTTTTAAAATGTGACTGGGAGGGAAATTCTACTTTTCACTTTTCTTTTTTTTTTTTTTTTAAGACGGAGTCTCGCTCTCTCGCCCAGGCTAGAGTGCAGTGGTGCGATCTCAGCTCACTGCCAGCTCCGCCTTCCGTGATCATGCCATTCTCCTGCCTCAGCCTCCCGAGTAGCTGGGACTACAGGCACCCGCCACCATGCCTGGCTAATTTTTTGTATTTTTAGTAGAGACAAGGTTTCTCTGTGCTAGCCAGGATGGTCTCGATCTCCTGACCTCGTGATTTGCCCGCCTCGGCCTCCCAAAGTGCTGGGATTACAGGCATGAGCCACCGCGCCCGGCCTCACTTTTCTTTTTTATGTAACAGCTATAGTATATAAGTTTTGAGTTTTTGGAGTAAGTTTACCAACTTTCAATAAAACCTAACTAGACTTTTTATTTGGGCTGCATTGAATTTATAGATTAGTTTGGTAAACACACTCAATTAGATCATCTGTGTTCTTTCTTAGAGCCTTAAAGTTTTCTTCATAAAAGTCCTGTGTATTTTTACTTAATGCTGTACACGTTATAATTTTATTACTATTGTGAATGGTATCTTAATTTTGCTTATATTTTCAAATTAGTTATTGCTGGCATAGAGAAATGCAATTGATTTTTGTAAATTGATCTTGTGTCTGGCATCCTTGCCAAACTCTCTTATTAGTTCTAAAAGCATGTATGTTTCATAATTGGTTTTTCTTTCTCTTTTTTTTTTTTTTTTTTTTTGAGACGGAGTCTTGCTCTGTCGCCCAGGCTAGAGTGCGGTAGTGCGATCTCAGCTCACTGCCAGCTCCGCCTCCTGGGTTCACGCCATTCTCCTTCCTCAGCCTCCCGAGTAGCTGGGACTACAGGCGCCCACCACCACGCCTGGCTAATTTTTTGTATTTTTAGTAGAGACGGGGTTTCACCGTGTTAGCCAGGATGGTCTCGATCTCCTGACCTTGTGATCCGCCCGCCTCGGCCTCCCAAAGTGCTGGGATTACAGGCGTGAGCTACTGCACCTGGCCAATAATTGGTTTTTCTATGTAGACAATCCTATCAACTGCAAATGACAATATATTATCTTTTTTTTTTTTTTTTTTTTTGAGATGGAGTCTCGCTCTGTTGCCAGGCTGGAGTGCTGTGACGCGATCTCGGCTCACTGTAACCTCCGACTCCCTGATTCAAAGGATTCCCCTGCCTCAGCCTCCCGAGTAGCTGGGACTACAAGCATGTGCCACCACGCCTGGCTAATGTTTTTTTGTATTTTAGTAGAGACGAGGTTTCACTCTGTTGGCCAGGATGGTCTCAATCTCCTGACCTCGTGATCTGCCCACCTCGGCCTACCAAAGTGCTGGAATTACAGGCATGAGCCACCGCGCCCGGCCGACAATATATTATCTTCTTTTCTAATGCCTATACCACCTTTTGTTTTTCTTTTCTTCTAACTTTGCCTAGGCCTTCCAGTGCTGTGGCAGGCAGTAGCAGTGAGAGTGGGCATCTTCATCTTGTTCCCCTTCTGGAAGGGAATACATCTACAGTTTCTCCACTGAGCATAATACCTGCTGTTATGACTTTGGCTTATACCTTTTACTAAATCTGGAAAGTTCCTTCTTTTCCTATTTTTCTAAAAGTATTTATCAAATACCTTTTCTTGCATAAATTTAAAAAACCAACCTGAAGACATATACCACCATATTGCTAGAAACAGAAATTCAAAACATGCTTTCTTTCAGAGCACTGTGCCATCATTCAATGCACTGTGGCTGCATTGTAGGCTCTGAGAAACTGGTAAGGCATTGGTAAGGCTGCAAAACCCTTGGGAATATTAGAAGAAAAAGCTTTAACATATCCAAAAAACTACAAAGACATATTAATCGTTTTTATGTGCCAAGCCTCACAATAACTCTGTGAAGTAAGTACATTTTTTTTTTTTTTTTGAGACAGAGTCTCGCTCTGTCACCCAGGCTGGAGTGCAGTGGCGCCATCTCGGCTCACTGCAAGCTCCGCCTCCCAGGTTCACGCCATTCTCCTGCCTCAGCCTCCCGAGTAGCTGGGACTACAGGCACCTGCCACCACGCCCGGCTAATGTTTTGTATTTTTAGTAGAGACGGGTTTTCACCATGTTAGCCAGGATGGTCTCGATCTCCTGACCTCGTGATCTGCTTGCCTCAGCCTCCCAAAGTGCTGGGATTACAGGTGTGAGCCACCGTGCCCGGCTGTAAGTACAATTATTATTCTCAGTTTACAGATGAAGAAACTGAGGTAAGTGGTAGTTCAGTAATTTGCCCAGAATCACACAGCTAGTAAGTGATGGCCCTGGGAATGGACTTCAGGCAGCCTTCTCCAGAACCATTATCTCAGCATTCTGCTTTGTCCTGTCTCAAAAGCAGCCTAGCTGAAGCGGAAGCATCAATGGCAGTTGAGAGACCTTGGGCAAGTGTTCTTGTTAAAAAACAGATAATTCATCTTTGCTCCCATCTATCTCTTAGATATGCCCTATATGTGCATAAATATTTTGGATCTAAGTGATTGGTAAAGGATTCTGTTGCTCTTGTTTGCAGATCCACTGTACCGTGGAATCAGTGCCATGGATTCTAAGGCTGGTGGTCATTCAGGACGCTTCTATCTAAAAACCACCTGACACTGATCAAGCATTTTGTACATGTTAGTCACTATTCCAGTGTTATCTCCACTGGTGCAGGGTTTCTCAACCTTGGCACTATTGCCATCTGGGGCTGGGAAATTCTTTACTGTGGGGCCTGCCCTGTGCAATGTAGGATGTTTAGCAGCATCTCTGGATTCTATGCACTAGATGCCAGTGGCACCTCCTTCCCGGCTTGTGACCACCAAAAATATCTCCAGATATTTCCAAATGGCCTATGGGGGTAGAAGTTACCCAAGATTGACAATCACTGTATTAGTCCATTTAATTCTTCACAAAAACCCTATGATGTAAATACTCTTTTTTTTTTTTTTTTTGAGACAGAGTCTCGCTCTATTGGCAAGCTGGAGTGCAGTGGCACAATCTCAGCTCGCTGCAACCTCTGCCTGCCGGATTCAAGCAATTCTCCTGCCTCAGCCTCCTGAGTAGCTGGGATTATAGGTGCACGCCACCATGCCTGGCTAATTTTTGTATTTTTAGTAGAGACAGGATTTCACCATGTTGGCCAGTATGGTCTCAATCTCTTGATCTCATGATCCGCCTGCCTCAGCCTCCCAAAGTGTTGGGATTACAGGGGTGAGCCACTGTGCCTGACCAACGACTCTTATTATTATTTCCATTTTATCAATGAGGAAAGGAAACTTACACAGAAATTAACTTCCTCAAAGTTACACCAAATAGGTGCTGCAGCTGGGATTCAAATCCAGGCCCCTGACTCTAAGCTGAACCATGAGAATCTGCTGCCTCCCAACTAACTAATTATCTACATGGGTTCTACGCAGTATGATCCTTTGGGCCCTCAGGAACTCTCACATTCTTTTGGCCTGATTCCTGCAG
Seq C2 exon
ATACTGGGATCTGAAAAGTGGGGTTTGCACACGAATCTTCGGTGGTCACCAGGGGACTATCACTTGCATGGACTTGTGTAAGAACAGGCTCGTATCTGGAGGAAGAGATTGCCAGGTAAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000241322-CDRT1:NM_006382:7
Average complexity
IR-C
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0040027=WD40=PU(89.2=48.5)
A:
NA
C2:
PF0040027=WD40=PD(8.1=7.1),PF0040027=WD40=PU(91.9=81.0)
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)