BtaINT0000488 @ bosTau6
Intron Retention
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:F1MLX8]
Coordinates
chr19:33612122-33617055:-
Coord C1 exon
chr19:33616855-33617055
Coord A exon
chr19:33612244-33616854
Coord C2 exon
chr19:33612122-33612243
Length
4611 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAGT
5' ss Score
10.86
3' ss Seq
TTGTGGTCTGATTCCTGCAGGTA
3' ss Score
9.33
Exon sequences
Seq C1 exon
GTGGGACCGAAACAGAATCATCCACTATTCTGGGGGAGATTTGTTAGCTGTGTCATCCAATCGAAAGATCCAGCTTCTGGACATCATACGTGTAAAGGAGATACCCATCAGGTTTCGAGGCCATGCTGGAAGTGTCCGGGCCCTCTTCTTGTGTGAAGAAGAAAACTTTCTCCTGAGTGGGAGTTATGACCTGAGTATCAG
Seq A exon
GTAAGTGGTCCAAGAAAGTTGTGGTCCTCACCTTGCCCAGGCTTAAACACAGCTTGTGGAAAAAGCATGTGTGCTTTTATGTTTTTTCACATTTATGCAAAAGTTATCCTAAATGATGCTGACTTCTAGAATAACCCACACTTGTTTTTGGCAAGATAAAAACCAAAAATTTGTATATTGTTTAAACTTTGAGTGAGATAGATTTATAGTAATTATTAGATTTATTTTCTAGCTGAAGGCTACGAATCGGAAAGTATTTTCTTTAGTATTCTTAGATGAAAGCAAAATTTATATTTCTTTTTACAGATTCCTTCAGGGGAAAGTAGTTTTTTTGTGGGTGTGAAACCTGGTATGGAAACCAAATAGTGATAAAAGTGTATATATACAAATATTTTTAAACAATATAATAAACACTCATGTGCTCATTACTCAGGTCAAGAAGTAGGGCATATAGTTCAGTTCAGTTCAGTTCAGTCACTCAGTCGTGTCCGACTCTTTGTGACCCCATGAATTTCTGCACGCCAGGCCTCCCTGTCCATCACCAACTCCCAGAGTTCACCCAAACTCATGTCCATCAAGTCAGTGATGCCATCCAACCACCTCATCCTCTGTCGTCCCCTTCTCCTCCTGCCCCCAATTCCTCCCAGCCTCAGAGTCTTTTCCAATGAGTCAACTCTTCACATGAGGTGGCCAAAGTATTGGAGTTTCAGCTTTAGCATCAGTCCTTCCAATGAACACCCAGGACTGATCTCCTTCAGAATGGACTGGTTGGATCTCCTTGCAGTCCAAGGGACTCTCAAGAGTCTTCTCCAACACCACAGTTCAAAAGCATCAATTCTTCGGTGCTCAGCTTTCTTCACAGTCCAACTCTCATATCCATACATGACTACTGGAAAAACCATAGCCTTGACTAGACGGACCTTTGTTGGCAAAGTAATGTCTCTGCTTTTGAATATGCTATCTAGGTTGGTCATAACTTTCCTTCCAAGGAGTAAGCGTCTTTTAATTTCATGGCTGCAGTCACCATCTGCAGTAATTTTGGAGCCCAAAAAAATAAAGTCTGACACTGTTTCCACTGTTTCCCCATCTATTTCCCATGAAGTGATGGGCCCAGGTGCCATGATCTTCGTTTTCTGAATGTTGAGCTTTAAGCCAACTTTTTCACTCTCCTCTTTCACTTTCACGAAGAGGCTTTTTAGTTCCTCTTCACTTTCTGCCATAAGGGTAGTGTCATCTGCATATCTGAGGTTATTGATATTTCTCCCTGCAATCTTGATTCCAGCTTCTGCTTCTTCCAGCCTAGCGTTTCTCATGAAGTACTCTGCATATAAGTTAAATAAGCAGGGTGACAATATATAGCCTTGATGCACTCCTTTCCCCAAATCTCATTGTGTACCTTTCTCTTATTTTTCCTTTCTTCCTCCCAATCAGTATAAATTTTATACTTAAATTTCTTTATAGTTTTGCTACCTATTTATGTATCTCCAGATATATTCACTACCTTTGTCCTTTCTTGAACTCAACATAAATGTAGTTATATTTTAAAAATTCACGTGCACTTGATTCTTGCACTAATTTTGAGATTCATCTTTATGATATAGATAGCAGTAGTTAACTTATTGTCACTGAGATATAGTATTTTATTGGATGAATGCATCATCATAACTCATTTATTTACTCTTCTGTTGGTGGATATTTGCATTGTTGTTAGCTCTTTATTCTTTCAAAGATTACTGCCATAGACATTCCTGTATGTGTTTCCTGGTACCCATGTGTATGAATTAAAAAAATGTTTTTGTTGAGGTATAATTGACATACAAAGTTTAAACAATTTTTTTATTGAGGTAGAATTGACATAAAATATATTAGGTGTATAATATAATGACTTGATATATGTATATATTGCAAAATAATTACCCCAGTGAATTTAGTTATATCCATCACTTAACATAGTGACATTTTTTTTCTTGTGATGAGAACTTTCAAGATCTACTCTCAGCAACTTTCAAAAATAAAACACAGTGTTGTTGGCTTGCTTTTCTATTCTTATATCAAAACTACCTTTTTAAAAAAGACAATTTTTATAGAGCAGTTTCAGATTCACAGCAAAATTGACAGAAGACACAAAGTTTTCCAATATACCCTCTGCACCTGCACACGAATATATTCTCTTGTCCTCAAGATTCCCCATCAGAGTGGTACATGTGTTACAACCGATGACCCTGCTTTGACACATCATAATCTGTGCTTTCATGATGGCTCAGTGGGTAAAGAATCCTCCTGCAGTGCAGGAGATACAGGAGATAGGAGTTCGATCCCTGGCTTGGAAAGATCCCCTGGAGGAGGAAATGACAACCCACTCCAGTATTCTTGCCTGGAGAATACCTTGGTCAGAGGAGCCTGGTGGGCTACAGTCTGTGGGGTCACAAAGAGTTGGACGCAACTGAGTGACTGAGCATGCGTGCAATTACCTAAAGTCGACAGTTTAACTTAGGGTTCACTTGGTGGTGTACATTGTATGCATTTGGACAAATATATAATGACACATATCCATCATTATAGTATCATACAAAGTATTTTCACTGCCCTAAAAGTCCTCTGCTCTTTACCTATTCATGCTTCTCCCAATCCCTGACAACCATTAATCTTTCTACTGGCTCTGTAGTTTTGCCTTTTCCAGAATGTCATGTAGTTGAAATCATATAGTGTGTAGCTTTTTCAGATCTTCTTTCACTTAGTCATATGCATTTAAGGCTCCTCCATGTCTTTTCATATCTGGATAGCTCATTTTTTACTTACATTGAATAATATTCCACTGTCCAGAGGGACCACAGTTTATTTATTCCTTCATCCACTGAAGGATATCTTGGTTGCTTCTACATTTTGTCTGTTATGAGTAAGTGGCTATAAACATCCATTTACAAGTTTTAAAAAATATTTGCTTATTTAGTTGGCTACAATGGTCTTAGTTGCAGCATGCAGAATCTTCATTGCTGCTTGTAGGATCTTTAGTTGCAGCATGTGGACCTAGTTCCCTGACTAGGGATTGAACCCAATCCCCCTGTATTGGGAGCATGGAGTCTTAGCCACTGGACAACTAGGGAAGTCCCCATTCCTATTTTTCTAAAAGCGTTTATCAAATACCTTTTCTGCATAAATTATGAAAACAACCTGGGCATATGGTCAACCATGCTGCTAGGAAGTAGAAATTCAAAACATGCTTTTTTTTCAGACCACTGGGACCTTGTTAAAGTCAACTATGTATGCATAGGAGGCTCTGATGAACAGATAAAGGCCATGGGACCTTTAGGAATATTAGAAGGAAAAGTCTGACAATGCCTGCCCCCCCCTGCCCCCAATCAAAAGAAACATTTACTTATTGTTTATTATGTGCCAAGTCTCCTAATAACTCTATGGGATAAGTACCATTATTATCCCCAATTTACAAATGAGGAAACTGAGATAGCAGGTGATTCAGCAACTTATTTGAGATCACACAGCCAGTGAGTGATGGATATGGGAGTGGACCTCAGGCAGCCTGGCTCCAGAGCCCAGTCTCTTGACATTATACTTTGTCCTGTCACAAAGTCAGTATGAATGATGGTTGAAAGATCTGAGGCAGGTTTGTATATTAAAAAATAGTGTGACTCATACATGTTTCCCATATATCTCTTAGATATGCTTTGTGTGTGTGTGTTTAGTTGCTAGGTCATGTCTGACTCTTTGTGACCCCAAGAACTGTAGCCCACCAGGTTCCTCTGTCCATGGGATTCTCCAGGCAAGAATACTGGAGTGGGTTGCCATTTCTTCCTCCAGGGGATCTTCTCAACCCAGGGATGGAACCCAGGTCTCCTGCATGGCAGGTGGATTCTTTACCACAGAGTCACCTGGGAAGCCCTAGATATGCTTTAGAAATGCACATAAAATAGTCTGAATCCAAGTGGCATGTGTCAATTGTTCTGTTGTTCTTGTTTGAAGATCAGCTCTACCACTGAATCAGTGTTGTGGATTCTGAGCCTGGTGATTGTTCTAGGGACCCTTCCATCTGATGAAAAGTAAAAGTGTTAGTCACTCAGTTGCGTCTGACTCTTTGCAATCCCATGGACTGTAGCCCGCCAGGCTCCTCTGTCCATGGAATTAAGCCATTCCCTTCTCCAGGGGAACTTCCTGACCCAGGGATCAAACCTGGGTCTCCCACATTGCAGGCAGATTCTTTACCATTTGAGCCACCAGGGAAGCCCAGCTTGTGACAACCAAACATGTCTCCAGACATTGTCACATGTCCCCTGGGAGTGGATGTCACCCCTAGTTGACAATTTCTGCATTACTGTATTTAATTCTTCATAAACCTGTGAGATAATTATTTTTATTATCATTTCCATTGAATCAAGGAGGAAATGAAGTTTTCACTGAAGTTCAGTAGCTTTATTAAAGTTACACCTAAGAAATGCTGCAAGTGGGATTCAAATCCAAGCCTTGGACTCTGAGCTTAATCATGAAACTCTGATGCCTTCCAACTACCTATCAACCTAAAGGAACTCTATGCTATTGAACCCTTGGGTCCTCAGAAAGTCTCAAAAACATCTCTTTTTTGTGGTCTGATTCCTGCAG
Seq C2 exon
GTACTGGGATCTGAAAAGTGGGGCTTGTATACGCATCTTCAATGGCCACCAGGGGACCATCACCTGCATGGATGTGTATAAGAACAAGCTTGCCTCTGGAGCAAAAGATTGCCAGGTAAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000002605:ENSBTAT00000003367:17
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0040027=WD40=PU(89.7=51.5)
A:
NA
C2:
PF0040027=WD40=PD(7.7=7.1),PF0040027=WD40=PU(91.9=81.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]