DreINT0067785 @ danRer10
Intron Retention
Gene
ENSDARG00000086484 | fbxw10
Description
F-box and WD repeat domain containing 10 [Source:ZFIN;Acc:ZDB-GENE-101021-1]
Coordinates
chr12:35853704-35854710:+
Coord C1 exon
chr12:35853704-35853907
Coord A exon
chr12:35853908-35854588
Coord C2 exon
chr12:35854589-35854710
Length
681 bp
Sequences
Splice sites
5' ss Seq
CAGGTTAGT
5' ss Score
8.02
3' ss Seq
ATTCTCTACTGCTTTTGAAGGTG
3' ss Score
6.66
Exon sequences
Seq C1 exon
AGAAGATGGCAGTAGAGTGATGCATTATGCTGGAGGGCAGTTGGTGGCTGTTGGCTCCAGGGATCGAACCATCAGGTTGCTGCATATCGGATCACTGAAAGAGCTTCCTCTAGTAATTCAAGGACATTCAGGTAGTGTAAGAGCAGTCCTTGTTTGTGAAGAGAAAGACCTGGTTATCAGCGCCAGCTATGATCTCAGTATCAG
Seq A exon
GTTAGTCAGACATTATTATGCTGTTTCAAAAATTAAGATGATAGATCACTCAAACAATGACTTTTGCTGCTCGTTCAAACTACTTAAAATGTTTAAATTACTTTAAAATTAGTTGAAACAAGATGGCACAGTGGGTTGCCCTGTCGCTTCACAGCAAGAAGGTTGCTGGTTTGAGCGAGGACCAGTTGGCTTTTCTGTGCAGAGTTTTTATGTTCTCCCCGTGTTTGCAAAAGTTTCCTCTGGGTCCTCTGGTTTCCCCCACAGTCCAAAGACATGCACTATTGGTGAATTGGATAAGTTAAATTCTCTGTAGTGTATGTGTCTGAATGAACGTACTGTATGGGTGTTTCCCAGTGATGGGTTGCAGCTGAAATGGCATCTGCTGCACAAAACATATGCTGAATAAGTTGGCCATTCATCAGCTGTGGCGACCCTATTTAATAAAGTGACTAAGCTGAAAAGAAAATGAATGAATGAGATAAAAACACCATTGTTAGGTTTTTTTTGTTTGTTTTGGGGGGTTGGGGGGCTTAAAATTTTAATTCACTTAAATTTGTAAAAATGAATCAGATAACTTAATCAATTGTGTTAGGACAACATGTAGAAATTGTGTGGAACCCAGCATTTTTACAGTGTTGGCAATAAAGAATATTGTGCTTTAATTCTCTACTGCTTTTGAAG
Seq C2 exon
GTGCTGGAACCTGAAAACAGGCATGTGTATGATGATTTTTCATGGACATTTTGGGACTATAAACTGCCTTGATTTGGTTGGAGATAGGCTGGTCTCTGGAGCCAAAGACTGTAGAGTTAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000086484:ENSDART00000123825:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0040027=WD40=PU(89.7=50.7)
A:
NA
C2:
PF0040027=WD40=PD(7.7=7.1),PF0040027=WD40=PU(91.9=81.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGAAGATGGCAGTAGAGTGATGC
R:
CTTTAACTCTACAGTCTTTGGCTCCA
Band lengths:
326-1007
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]