HsaINT0063010 @ hg19
Intron Retention
Gene
ENSG00000171931 | FBXW10
Description
F-box and WD repeat domain containing 10 [Source:HGNC Symbol;Acc:1211]
Coordinates
chr17:18661618-18668176:+
Coord C1 exon
chr17:18661618-18661818
Coord A exon
chr17:18661819-18668054
Coord C2 exon
chr17:18668055-18668176
Length
6236 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGG
5' ss Score
10.07
3' ss Seq
TTTTGGCCTGATTCCTGCAGATA
3' ss Score
8.44
Exon sequences
Seq C1 exon
GTGGGATCAAAACCGAGTCATCCACTATTCCGGGGGAGATCTGATAGCTGTGTCATCTAATCGAAAGATCCATCTTCTGGACATCATACAAGTGAAAGCGATACCCGTTGAATTCCGAGGCCATGCTGGGAGTGTCCGGGCCCTCTTCCTGTGTGAGGAGGAAAACTTTCTCCTAAGCGGGAGCTATGACCTAAGTATCAG
Seq A exon
GTGAGGAGTCCAAAGGCATCATGATCCCTGTCCCACCTAGGGCCTAGAGGCAGCTCATGGAAGAAGTGTGCATGCTTCTTCTTTTTATATTTAACAGTTTTCCTAGAAGATACTGACTTCTAGAATACCTTCAGCTTTTTTTTGGCAAGGAAAAAGTCAGGAATGTATATATTGCTTAAAATTTGAATGAGATGGATTTATAACAGTTATCAGATATATTTTCTAATTGATGACTGCAAATCAGAAAAATTTTCTTTATTAGCATTCTTAGAGGAAGAAATAATTTACATTTGTTCTTACAGACTCTTTCAGGGGAACGTGGTTTTTATGGGTTTGAGACAGACTATAGAGGCAAAATAGTGCTTTAAAAACACATACGTGGCCAGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCTGAGGTGGGCAGGTCACGAGGTCAGGAAATCAAGACCATCCTGGCTAACATGGTGAAACCCCGTCTCTACTAAACAAAATACAAGAAATTAGCTGGGCGTGGTGGCGGGTGCCTGTAGTCCCAGCTACTCGGGACGCTGAGGCAGGAGAATGGTGTGAACCTGGGAGGTGGAGCTTGCAGTGAGCCGAGATGGTGCCACTACACTCCAGACTGGGCGACACAGCGAGACTCCATCTCAAAAAAAACCACATATGTATATTTTTAAACAATATAACAAACACTCATGCATCCATTACTCAGGCCAAGAAATAAGATACCACCATTCCCCAACCCTCCCACTGTGCCCTTCTCTTCTTGCTTCTTCCTGCCAACCAGAGGTAATATTATTCTAATTTTATACTAATGATTCCCTTGCATTTCTTAATCATTTTTGCTTCCTTCTTATACATCTCCAGAAGTATTAGTTACTTGTGCCTGTTTTTGAACTCAACATAAAAAGAATCATATTTTAAAAATTTGTTGGTACCTCATTCTTACATGGAACTGTTTTTGAGATTCACCTATATGATGCAGGTGGCAGTAATTAACTTATTTTCACTGAGATACTGTATTAAATTGGATGATTGTATCGTAACTCATTTATTTGTTTTTCTGTTGGTGGACATTTGCATTGTTTCTAGTTTTTTGTTTTTTTTTTTGAGATGGAGTCTCACTGTGTCACCCAGGCTGGAGAGCAGTGGCGCCATGTTGGCTCACTGCAAGCTCCACCTCCCAGGTTCACACCATTCTCTTGCCTCAGCCTCCCAAGTAGCTGAGACTACAGGGGCCCGCCACCACACCAGGCTATTTTTTTTTGTATTTTTTAGTAGAGAAGGGGTTTCCCCATGTTAGCCAGGATGGTCTCGATCTCCTGACCTCGTGATCCACCCGCCTCGGCCTCCTAAAGTACTGGGATTACAGGTGTGAGCCACCGCGCCGGGCCCTTGTTTCTAGTTTTTAATTATTTCAAAGAATGCTGCCAGAGACGGGTCTTGGATGTGTCCCCTGGTGCCCATGTGCACGAGTTTTTTAAAGGTATATTCTTAGTATGGGAATTTCTAGGAAGGAGTACTAAACTGTTTTCCAATGTGGTTGTATTAATTTACATTCCCATTAGCAGCATATGAGAATATCTCTTCTTATATATTCTCACCAACACTTACTATTGACAGTCTAACAGTTTTGTCAATCTGATGGGTATTAAATGAAACCCACTGTGTTTTATTGGGGTTTAAATTTTAACTTTCCTGATTACTAATGAAGTTGAACACCTTTTCATATGTGTATTAGTCAGGGTCTCCAGAGAAACAGAACCAATACAATGTGTATATACATAGGAGATTTACTATAAAGTATTGACTTGTGTGATCAAGGTGGCTGGCAAGTCCAAAATCTGCAGCGTGGGGCCAGCAGGCTGGAGACCCAGGAGAGCCAACGGTGCAGATGAAGCCCAAAGGCCATCTGCCAGAGAATACCCTCTTGCCAGGACTATCTATTAACTGTGTTCATAGTATCTACATGAATTTTGTTGAACAAAAATTCTCAATATGGGCCAGGCGCGGTGGCTCATGCCTGTAAGCCCAGCACTTTGGGAGGCTGAGGCAGGCGGATCATCTGAGGTCGGGAGTTTGAGACCAGCCTGACTAACATGGAGAAACCCCGTCTCTACTAAAAATACAAAATTAGCTGGGCATGGTGGCACATGCCTGTAATCTCAGCTACTCAGGAAGGCTGAGGCAGGAGAATCACTTGAACCTGGGAGGTGCCACTGCACTCCAGCCAGGGCAACAAGAGCGAAACTCGGTCTCAAAAAAAAAAAAAAAATCTCAATATGAATGTAATAAAATATCAGTTTATCAGGGTTTTTTTTTTCTTCATTTCTGTGATTCTTCCCTCTTCTAGGTCATAGAGATATTTTCTAATATTTTCTTCTATCAACATTACAGTTTTATCTTTTGCATTCAGTTTTTTAATCTCTTTGCAATTCAACCTTGTATGTGGCATTAGGTAGGGTTTCCATTTCATTTATTCATATTTAGATAAAGTGAGCAGTTTCTCCCCCACAGCAACTACTATATAACCTGCCACTTCCTGCATTGATTTGAGGTGCTATCTTTATCACATTGAAATTTCCCATATGTGCATGAGAATGTCCCTGAGTTCTCTGATCTAGTCCACTGCCTTTCTGTTTTTAATCAAAATCCCCCTCCTTGAAAACTGTTTGTTTTGTTTTTAGGTATGCATTTGGAGAATGTTTTAAAATGTGACGGGGAGGGAAATTCTACTTTTCACTTTTCTTTTTTTTTTTTTTTAAGACGGAGTCTCGCTCTCTCGCCCAGGCTAGAGTGCAGTGGCGCGATCTCAGCTCACTGCCAGCTCCGCCTTCCGTGATCATGCCATTCTCCTGCCTCAGCCTCCCGAGTAGCTGGGACTACAGGCACCCGCCACCACGCCTGGCTAATTTTTTGTATTTTTAGTAGAGACAAGGTTTCTCTGTGCTAGCCAGGATGGTCTCGATCTCCTGACCTCGTGATTCGCCCGCCTCGGCCTCCCAAAGTGCTGGGATTACAGGCATGAGCCACCGCGCCCGGCCTCACTTTTCTTTTTTATGTAACAGCTATAGTATATAAGTTTTGAGTTTTTGGAGTAAGTTTACCAACTTTCAATAAAACCTAACTAGACTTTATTTGGGTTGCATTGAATTTATAGATTAGTTTGGTAAACACACTCAATTAGATCATCTGTGTTCTTTCTTAGAGCCTTAAAGTTTTCTTCATAAAAGTCCTGTGTATTTTTACTTAATGCCTGTACAGTTATAATTTTATTACTATTGTGAATGGTATCTTAATTTTGCTTATATTTTCAAATTAGTTATTGCTGGCATAGAGAAATGCAATTGATTTTTGTAAATTGATCTTGTGTCTGGCATCCTTGCCAAACTCTCTTATTAGTTGTAAAAGCATGTATGTTTCATAATTGGTTTTTCTTTTTCTTTTTCTTTTTTTTTTTGAGACGGAGTCTTGCTCTGTCGCCCAGGCTAGAGTGCAGTAGTGCGATCTCAGCTCACTGCCAGCTCCGCCTCCTGGGTTCATGCCATTCTCCTTCCTCAGCCTCCCGAGTAGCTGGGACTACAGGCGCCCACCACCACGCCTGGCTAATTTTTTGTATTTTTAGTAGAGACGGGGTTTCACTGCGTTAGCCAGGATGGTCTCGATCTCCTGACCTTGTGATCCACCCGCCTCGGCCTCCCAAAGTGCTGGGATTACTGGCGTGAGCTACTGCACCTGGCCAATAATTGGTTTTTCTACGTAGACAATCCTATCAACTGCAAATGACAATATATTATCTTTTTTTTTTTTTTTTTTGAGATGGAGTCTCGCTCTGTTGCCAGGCTGGAGTGCTGTGACGCGATCTCGGCTCACTGTAACCTCCGACTCCCTGATTCAAAGGATTCCCCTGCCTCAGCCTCCCGAGTAGCTGGGACTACAGGCATGTGCCACCACGCCCGGCGGCTAATGTTTTTTTGTATTTTAGTAGAGACGAGGTTTCACTATGTTGGCCAGGATGGTCTCAATCTCCTGACCTCATGATCTGCCCACCTCGGCCTACCAAAGTGCTGGAATTACAGGCATGAGCCACCACGCCCGGCCGACAATATATTATCTTCTTTTCTAATGCCTATACCACCTTTTGTTTTTCTTTTCTTCTAACTTTGCCTAGGCCTTCCAGTGCCATGGCAGGCAGTAGCAGTGAGAGTGGGCATCTTCATCTTGTTCCCCTTCTGGAAGGGAATACATCTACAGTTTCTCCACTGAGCATAATACCTGCTGTTATGACTTTGGCTTATACCTTTTACTAAATCTGGAAAGTTCCTTCTTTTCCTATTTTTCTAAAAGTATTTATCAAATACCTTTTCTTGCATAAATTTAAAAAACCAACCTGAAGACATATACCACCATATTGCTAGAAACAGAAATTCAAAACATGCTTTCTTTCAGAGCACTGTGCCATCATTCAATGCACTGTGGCTGCATTGTAGGCTCTGAGAAACTGGTAAGGCATTGGTAAGGCTGCAAAACCCTTGGGAATATTAGAAGAAAAAGCTTTAACATATCCAAAAAACTACAAAGACATATTAATCGTTTTTATGTGCCAAGCCTCACAATAACTCTGTGAAGTAAGTACAATTTTTTTTTTTTTTTTGAGACAGAGTCTCACTCTGTCGCCCAGGCTGGAGTGCAGTGGCGCCATCTCGGCTCACTGCAAGCTCTGCCTCCCAGGTTCACGCCATTCTCCTGCCTCAGCCTCCCGAGTAGCTGGGACTACAGGCACCTGCCACCACGCCCGGCTAATGTTTTGTATTTTTAGTAGAGACAGGGTTTCACCATGTTAGCCAGGATGGTCTCGATCTCCTGACCTCGTGATCTGCTTGCCTCAGCCTCCCAAAGTGCTGGGATTACAGGTGTGAGCCACCGTGCCCGGCTGTTAAGTACAATTATTATTCTCAGTTTACAGATGAAGAAACTGAGGTAAGTGGTAGTTCAGTAATTTGCCCAGAATCACACAGCTAGTAAGTGATGGCCCTGGGAATGGACTTCAGGCAGCCTTCTCCAGAACCATTATCTCAGCATTCTGCTTTGTCCTGTCTCAAAAGCAGCCTACCTGAAGCGGAAGCATCAATGGCAGTTGAGAGACCTTGGGCAAGTGTTCTTGTTAAAAAACAGATAATTCATCTTTGCTCCCATCTATCTCTTAGATATGCTCTATATGTACATAAATATTTTGGATCTAAGTGATTGGTAAAGGATTCTGTTGCTCTTGTTTGCAGATCCACTGTACCGTGGAATCAGTGCCATGGATTCTAAGGCTGGTGGTCATTCAGGACGCTTCTATCTAAAAACCACCTGACACTGATCAAGCATTTTGTACATGTTAGTCACTATTCCAGTGTTATCTCCACTGGTGCAGGGTTTCTCAACCTTGGCACTATTGCCATCTGGGGCTGGGAAATTCTTTACTGTGGGGCCTGCCCTGTGCAATGTAGGATGTTTAGCAGCATCTCTGGATTCTATGCACTAGATGCCAGTGGCACCTCCTTCCCGGCTTGTGACCACCAAAAATATCTCCAGATATTTCCAAATGGCCTATGGGGGTAGAAGTTACCCAAGATTGACAATCACTGTATTAGTCCATTTAATTCTTCACAAAAACCCTATGATGTAAATACTCTTTTTTTTTTTTTTTTTTTTGAGACAGAGTCTCGCTCTATTGGCAGGCTGGAGTGCAGTGGCACAATCTCAGCTCGCTGCAACCTCTGCCTGCCGGATTCAAGCAATTCTCCTGCCTCAGCCTCCTGAGTAGCTGGGACTACAGGTGCACACCACCACGCCCAGCTAACTTTTGTATTTTTAGTAGAGACAGGGTTTCACCATGTTGGCCAGTATGGTCTCAATCTCTTGATCTCATGATCTGCCCGCCTCAGCCTCCCAAAGTGCTGGGATTACAGGGGTGAGCCACTGTGCCTGACCAACGACTCTTATTATTATTTCCATTTTATCAATGAGGAAAGGAAACGTAACACAAAAATTAACTTCCTCAAAGTTACACCAAATAGGTGCTGCAGCTGGGATTCAAATCCAGGCCCCTGACTCTAAGCTGAACCATGAGAATCTGCTGCCTCCCAACTAACTACTTATCTACATGGGTTCTACGCAGTATGATCCTCTGGGCCCTCAGGAACTCTCACATTCTTTTGGCCTGATTCCTGCAG
Seq C2 exon
ATACTGGGATCTGAAAAGTGGGGTTTGCACACGAATCTTCGGTGGTCACCAGGGGACTATCACTTGCATGGACTTGTGTAAGAACAGGCTCGTATCTGGAGGAAGAGATTGCCAGGTAAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000171931-FBXW10:NM_031456:7
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0040027=WD40=PU(89.2=48.5)
A:
NA
C2:
PF0040027=WD40=PD(8.1=7.1),PF0040027=WD40=PU(91.9=81.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)