MmuINT0063431 @ mm10
Intron Retention
Gene
ENSMUSG00000090173 | Fbxw10
Description
F-box and WD-40 domain protein 10 [Source:MGI Symbol;Acc:MGI:3052463]
Coordinates
chr11:62859840-62862751:+
Coord C1 exon
chr11:62859840-62860040
Coord A exon
chr11:62860041-62862629
Coord C2 exon
chr11:62862630-62862751
Length
2589 bp
Sequences
Splice sites
5' ss Seq
AAGGTGAGA
5' ss Score
8.68
3' ss Seq
ATGCGCCTTCACTTCTGCAGATA
3' ss Score
9.6
Exon sequences
Seq C1 exon
GTTTGACCAAAACAGAATCATTCACTATAACGGGGGAGACCTAATGGCCATATCATCCAATCGGAAGATCCACCTTCTAGATATCATGCAGACCAAGGAGCTGCCCATCGAGTTCCGAGGCCATGCCGGCAGCGTCAGGGCTCTCTTCCTGTCTGAGGAGGACAATATTCTCCTGAGTGGGAGTTACGATCTGAGCATAAG
Seq A exon
GTGAGAGCTATAAGGCCATGATCGTTGTCATGTCTGGGGCCAGCCAAAACTAGGTAGCTTTTGGGAGAAGCAAGCATGGAATGCTTTGCCCATTTTATATTTATGTTGTCCATTTTATATTTATGTATAGGTTATCCTGAATTACATTACTTCTAGAATATCTATAAAAGCAGGGTTCTTTTTGCAAGATACAAGCCAAGATTTTACTTACTGTTTAAGATAGATTTGTAAGCTATCAGATGTCGGCATTGAAAATCAGAATTTTTTTTCTGTTTTTAAAAAATATTCTTTTTTTTTTTTTCCTAAATAGGGTTTCTCTGTGTAGCCCTGGCTATCCTGGAACTCACTCTGTAGAACAAGCTGGTCTCAAACTCAGAAATCCACCTGCCTCTGCCTCCCAAGGCATGCCCGGCCTAAAAAATATTCTTAAATAAACATGTCTATATATATCTATATATTTAAAATAAATTGTTTCAAGAGAAATTAGTTTTTTTATGGGTGGGAAATGTAATATGGAAGCAAAACCATGTTCAAACTGGGTATATTCATATATTTTAGTTTTAGAGATTTATTTAAAAATTAAGAAAAAATTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTACATGCTTGTGGGTGGGTTCATGGCTGAGTTCAGCTGCCCTTGGAGGATAGTAGAGGGTGTTGGATATCCTGGAGCTGGACCATTGGCATGGGTACAGGGATCCATCCTTTCAGCCACTCATATTAAAGAATGTAATAAATATCCCTGTGCCCATTGCTCAGACCGGGAATGAGCCCTTCCCCGGCCTCTGAGTGATCTCTTCCTCCTTGTTTCTTTTTTTTTCCAGACAGGTATTGTTGCCCAAAGTTTCATAATGATCACTGTCTTGTGTTTCTTTATAGTTTTGCTTCTTGCTTATATATTTTCAACAGTAACAGCTATTTGTTTATGTCTCTGCTTCAAGTCAAAATAGATGAAACTGTACTTTGAAAACGCTTGGTCTTGACCTGGGCTGTTTGAGACTCACCATAGGGTGTGTTCAGCAGTCATGGCTTATTTGTGTGGAGCCATGGGGTTTTACCTGGTGGATATTTGTGCAGATGAATATTTGTGTAATTTTGGGTGTCCGGGTCTAGAGTGCTGCTACGAATGACCTTGGCTATGTCACCTGGTGTCCGAGTACATAAGCTTTGGGCTGTGGTTGCTTTCTTTTCTAACTGTCTAGCTACATAGTCCAGGCTCACAGCAACCTTCCTGCCATAGCCTCCTGAATGCTGGGATTATAGGCGTGCAGTGTCACGTCTGGCATTGTGGTGCCTTTGTAAAAGCCCTGTTTTATTTTATTTTTGCCTTTCACTTTTAGGTGTTCAGTCTACCTACAATTCATTTTTGTTATGACAGCCTCTTGTTTTAAGAGGCTGTTTGTGTCCCCAACTGTCTCAGCATCATTCATGGAAAAAAAAAGTCTCCCGCTAGTCTGCAAGGCTGGCTGTGCCCTAAGACTCGCATCCCCATCTCCCATTCCTAGGCTCTCTGTTGTATTTCACCCTTCCGTGTGGCTGTCGTTGCTCAACAGTGTTTCAATTACTTTGGTTTTAAAATGCGGTGGGGTAAGTCCTCTATCTCATTCGACTGTGGTTACCCTCTGACTTTTGTTCATTCTGTTTATTTTCGGTTTTCAACATTAGGGAGAGGGAACTGAGCTGCCTGTACATTTCAGTTCACACTATGCGGTCACTATCAGTCTGCGCGAGGCTTCATTTCTATTTATTCATCCATTAGTTTACTCTGTTTCATCTCTGCCTTCCCTCCCACTCCTCGGGGTACTACCTAACCTCTACCTCACTGCTGGGGATTGAACCTGGGACTTCACAAACGCAAGGTACTGAACTCCAGCCACAGCCCCAACCTAATCCTTCTCAATGTGTATCCCCCTTTTCTTTTCTTTTCTTTTCTTTTCTTTTCTTTTCTTTTCTTTTCTTTTCTTTTCTTTTCTTTTTTTCTTTCTTTCTTTCTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGAGAGAGTGTCACTGCCTAGAACTCACCTAGCAGGCTAGGCTGATAGGTTAGTAAGACCCATGGATCTGCCACCTGCCCGCTGCTCCCACTACAAGCACAGGTCACCACGCTAGCTCTTTATTATATAGGTCCTAGGGGTCAGACTCAGGCCCTTGTCTTCCTTTCTTACTCAGTTATCTCCCAAGTTCCCTTCTTTTTTCTAGTGCACTCTTATTAAACCTCACCCAACTCCATTCCACTCAGAACGGCATCATGTCCTTATGCTTTCCAGTCAGTTACAGATAGAGGAGTGGTTTTGAGTTTTGCAGGTTGACGTGGGGCCAATGAACGCTTACCTGTTACTGGTTCTAACGTGCACACTGTGCTAATTTACTTTTTCTATAAAGATAATCTTACCAATGCCAACAGTGACAAGACCCTGTTGCCTATTTAACTATGTAGCTATCTAAAGGAACCCTATATAGCAGGACCCTCTGGACAGTCAGAAAAATCTCTAAAATGCGCCTTCACTTCTGCAG
Seq C2 exon
ATACTGGGATGTGAAAACCGGGGCTTGTGTACGAATCTTTTATGGCCACCAGGGGACAATCACTTGCCTGGATGTCTATAAGAACAGGCTTGTATCTGGAGCAAAAGATGGACAGGTGAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000090173:ENSMUST00000176577:7
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0040027=WD40=PU(89.7=51.5)
A:
NA
C2:
PF0040027=WD40=PD(7.7=7.1),PF0040027=WD40=PU(91.9=81.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types