HsaINT0063010 @ hg38
Intron Retention
Gene
ENSG00000171931 | FBXW10
Description
F-box and WD repeat domain containing 10 [Source:HGNC Symbol;Acc:HGNC:1211]
Coordinates
chr17:18758305-18764863:+
Coord C1 exon
chr17:18758305-18758505
Coord A exon
chr17:18758506-18764741
Coord C2 exon
chr17:18764742-18764863
Length
6236 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGG
5' ss Score
10.07
3' ss Seq
TTTTGGCCTGATTCCTGCAGATA
3' ss Score
8.44
Exon sequences
Seq C1 exon
GTGGGATCAAAACCGAGTCATCCACTATTCCGGGGGAGATCTGATAGCTGTGTCATCTAATCGAAAGATCCATCTTCTGGACATCATACAAGTGAAAGCGATACCCGTTGAATTCCGAGGCCATGCTGGGAGTGTCCGGGCCCTCTTCCTGTGTGAGGAGGAAAACTTTCTCCTAAGCGGGAGCTATGACCTAAGTATCAG
Seq A exon
GTGAGGAGTCCAAAGGCATCATGATCCCTGTCCCACCTAGGGCCTAGAGGCAGCTCATGGAAGAAGTGTGCATGCTTCTTCTTTTTATATTTAACAGTTTTCCTAGAAGATACTGACTTCTAGAATACCTTCAGCTTTTTTTTGGCAAGGAAAAAGTCAGGAATGTATATATTGCTTAAAATTTGAATGAGATGGATTTATAACAGTTATCAGATATATTTTCTAATTGATGACTGCAAATCAGAAAAATTTTCTTTATTAGCATTCTTAGAGGAAGAAATAATTTACATTTGTTCTTACAGACTCTTTCAGGGGAACGTGGTTTTTATGGGTTTGAGACAGACTATAGAGGCAAAATAGTGCTTTAAAAACACATACGTGGCCAGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCTGAGGTGGGCAGGTCACGAGGTCAGGAAATCAAGACCATCCTGGCTAACATGGTGAAACCCCGTCTCTACTAAACAAAATACAAGAAATTAGCTGGGCGTGGTGGCGGGTGCCTGTAGTCCCAGCTACTCGGGACGCTGAGGCAGGAGAATGGTGTGAACCTGGGAGGTGGAGCTTGCAGTGAGCCGAGATGGTGCCACTACACTCCAGACTGGGCGACACAGCGAGACTCCATCTCAAAAAAAACCACATATGTATATTTTTAAACAATATAACAAACACTCATGCATCCATTACTCAGGCCAAGAAATAAGATACCACCATTCCCCAACCCTCCCACTGTGCCCTTCTCTTCTTGCTTCTTCCTGCCAACCAGAGGTAATATTATTCTAATTTTATACTAATGATTCCCTTGCATTTCTTAATCATTTTTGCTTCCTTCTTATACATCTCCAGAAGTATTAGTTACTTGTGCCTGTTTTTGAACTCAACATAAAAAGAATCATATTTTAAAAATTTGTTGGTACCTCATTCTTACATGGAACTGTTTTTGAGATTCACCTATATGATGCAGGTGGCAGTAATTAACTTATTTTCACTGAGATACTGTATTAAATTGGATGATTGTATCGTAACTCATTTATTTGTTTTTCTGTTGGTGGACATTTGCATTGTTTCTAGTTTTTTGTTTTTTTTTTTGAGATGGAGTCTCACTGTGTCACCCAGGCTGGAGAGCAGTGGCGCCATGTTGGCTCACTGCAAGCTCCACCTCCCAGGTTCACACCATTCTCTTGCCTCAGCCTCCCAAGTAGCTGAGACTACAGGGGCCCGCCACCACACCAGGCTATTTTTTTTTGTATTTTTTAGTAGAGAAGGGGTTTCCCCATGTTAGCCAGGATGGTCTCGATCTCCTGACCTCGTGATCCACCCGCCTCGGCCTCCTAAAGTACTGGGATTACAGGTGTGAGCCACCGCGCCGGGCCCTTGTTTCTAGTTTTTAATTATTTCAAAGAATGCTGCCAGAGACGGGTCTTGGATGTGTCCCCTGGTGCCCATGTGCACGAGTTTTTTAAAGGTATATTCTTAGTATGGGAATTTCTAGGAAGGAGTACTAAACTGTTTTCCAATGTGGTTGTATTAATTTACATTCCCATTAGCAGCATATGAGAATATCTCTTCTTATATATTCTCACCAACACTTACTATTGACAGTCTAACAGTTTTGTCAATCTGATGGGTATTAAATGAAACCCACTGTGTTTTATTGGGGTTTAAATTTTAACTTTCCTGATTACTAATGAAGTTGAACACCTTTTCATATGTGTATTAGTCAGGGTCTCCAGAGAAACAGAACCAATACAATGTGTATATACATAGGAGATTTACTATAAAGTATTGACTTGTGTGATCAAGGTGGCTGGCAAGTCCAAAATCTGCAGCGTGGGGCCAGCAGGCTGGAGACCCAGGAGAGCCAACGGTGCAGATGAAGCCCAAAGGCCATCTGCCAGAGAATACCCTCTTGCCAGGACTATCTATTAACTGTGTTCATAGTATCTACATGAATTTTGTTGAACAAAAATTCTCAATATGGGCCAGGCGCGGTGGCTCATGCCTGTAAGCCCAGCACTTTGGGAGGCTGAGGCAGGCGGATCATCTGAGGTCGGGAGTTTGAGACCAGCCTGACTAACATGGAGAAACCCCGTCTCTACTAAAAATACAAAATTAGCTGGGCATGGTGGCACATGCCTGTAATCTCAGCTACTCAGGAAGGCTGAGGCAGGAGAATCACTTGAACCTGGGAGGTGCCACTGCACTCCAGCCAGGGCAACAAGAGCGAAACTCGGTCTCAAAAAAAAAAAAAAAATCTCAATATGAATGTAATAAAATATCAGTTTATCAGGGTTTTTTTTTTCTTCATTTCTGTGATTCTTCCCTCTTCTAGGTCATAGAGATATTTTCTAATATTTTCTTCTATCAACATTACAGTTTTATCTTTTGCATTCAGTTTTTTAATCTCTTTGCAATTCAACCTTGTATGTGGCATTAGGTAGGGTTTCCATTTCATTTATTCATATTTAGATAAAGTGAGCAGTTTCTCCCCCACAGCAACTACTATATAACCTGCCACTTCCTGCATTGATTTGAGGTGCTATCTTTATCACATTGAAATTTCCCATATGTGCATGAGAATGTCCCTGAGTTCTCTGATCTAGTCCACTGCCTTTCTGTTTTTAATCAAAATCCCCCTCCTTGAAAACTGTTTGTTTTGTTTTTAGGTATGCATTTGGAGAATGTTTTAAAATGTGACGGGGAGGGAAATTCTACTTTTCACTTTTCTTTTTTTTTTTTTTTAAGACGGAGTCTCGCTCTCTCGCCCAGGCTAGAGTGCAGTGGCGCGATCTCAGCTCACTGCCAGCTCCGCCTTCCGTGATCATGCCATTCTCCTGCCTCAGCCTCCCGAGTAGCTGGGACTACAGGCACCCGCCACCACGCCTGGCTAATTTTTTGTATTTTTAGTAGAGACAAGGTTTCTCTGTGCTAGCCAGGATGGTCTCGATCTCCTGACCTCGTGATTCGCCCGCCTCGGCCTCCCAAAGTGCTGGGATTACAGGCATGAGCCACCGCGCCCGGCCTCACTTTTCTTTTTTATGTAACAGCTATAGTATATAAGTTTTGAGTTTTTGGAGTAAGTTTACCAACTTTCAATAAAACCTAACTAGACTTTATTTGGGTTGCATTGAATTTATAGATTAGTTTGGTAAACACACTCAATTAGATCATCTGTGTTCTTTCTTAGAGCCTTAAAGTTTTCTTCATAAAAGTCCTGTGTATTTTTACTTAATGCCTGTACAGTTATAATTTTATTACTATTGTGAATGGTATCTTAATTTTGCTTATATTTTCAAATTAGTTATTGCTGGCATAGAGAAATGCAATTGATTTTTGTAAATTGATCTTGTGTCTGGCATCCTTGCCAAACTCTCTTATTAGTTGTAAAAGCATGTATGTTTCATAATTGGTTTTTCTTTTTCTTTTTCTTTTTTTTTTTGAGACGGAGTCTTGCTCTGTCGCCCAGGCTAGAGTGCAGTAGTGCGATCTCAGCTCACTGCCAGCTCCGCCTCCTGGGTTCATGCCATTCTCCTTCCTCAGCCTCCCGAGTAGCTGGGACTACAGGCGCCCACCACCACGCCTGGCTAATTTTTTGTATTTTTAGTAGAGACGGGGTTTCACTGCGTTAGCCAGGATGGTCTCGATCTCCTGACCTTGTGATCCACCCGCCTCGGCCTCCCAAAGTGCTGGGATTACTGGCGTGAGCTACTGCACCTGGCCAATAATTGGTTTTTCTACGTAGACAATCCTATCAACTGCAAATGACAATATATTATCTTTTTTTTTTTTTTTTTTGAGATGGAGTCTCGCTCTGTTGCCAGGCTGGAGTGCTGTGACGCGATCTCGGCTCACTGTAACCTCCGACTCCCTGATTCAAAGGATTCCCCTGCCTCAGCCTCCCGAGTAGCTGGGACTACAGGCATGTGCCACCACGCCCGGCGGCTAATGTTTTTTTGTATTTTAGTAGAGACGAGGTTTCACTATGTTGGCCAGGATGGTCTCAATCTCCTGACCTCATGATCTGCCCACCTCGGCCTACCAAAGTGCTGGAATTACAGGCATGAGCCACCACGCCCGGCCGACAATATATTATCTTCTTTTCTAATGCCTATACCACCTTTTGTTTTTCTTTTCTTCTAACTTTGCCTAGGCCTTCCAGTGCCATGGCAGGCAGTAGCAGTGAGAGTGGGCATCTTCATCTTGTTCCCCTTCTGGAAGGGAATACATCTACAGTTTCTCCACTGAGCATAATACCTGCTGTTATGACTTTGGCTTATACCTTTTACTAAATCTGGAAAGTTCCTTCTTTTCCTATTTTTCTAAAAGTATTTATCAAATACCTTTTCTTGCATAAATTTAAAAAACCAACCTGAAGACATATACCACCATATTGCTAGAAACAGAAATTCAAAACATGCTTTCTTTCAGAGCACTGTGCCATCATTCAATGCACTGTGGCTGCATTGTAGGCTCTGAGAAACTGGTAAGGCATTGGTAAGGCTGCAAAACCCTTGGGAATATTAGAAGAAAAAGCTTTAACATATCCAAAAAACTACAAAGACATATTAATCGTTTTTATGTGCCAAGCCTCACAATAACTCTGTGAAGTAAGTACAATTTTTTTTTTTTTTTTGAGACAGAGTCTCACTCTGTCGCCCAGGCTGGAGTGCAGTGGCGCCATCTCGGCTCACTGCAAGCTCTGCCTCCCAGGTTCACGCCATTCTCCTGCCTCAGCCTCCCGAGTAGCTGGGACTACAGGCACCTGCCACCACGCCCGGCTAATGTTTTGTATTTTTAGTAGAGACAGGGTTTCACCATGTTAGCCAGGATGGTCTCGATCTCCTGACCTCGTGATCTGCTTGCCTCAGCCTCCCAAAGTGCTGGGATTACAGGTGTGAGCCACCGTGCCCGGCTGTTAAGTACAATTATTATTCTCAGTTTACAGATGAAGAAACTGAGGTAAGTGGTAGTTCAGTAATTTGCCCAGAATCACACAGCTAGTAAGTGATGGCCCTGGGAATGGACTTCAGGCAGCCTTCTCCAGAACCATTATCTCAGCATTCTGCTTTGTCCTGTCTCAAAAGCAGCCTACCTGAAGCGGAAGCATCAATGGCAGTTGAGAGACCTTGGGCAAGTGTTCTTGTTAAAAAACAGATAATTCATCTTTGCTCCCATCTATCTCTTAGATATGCTCTATATGTACATAAATATTTTGGATCTAAGTGATTGGTAAAGGATTCTGTTGCTCTTGTTTGCAGATCCACTGTACCGTGGAATCAGTGCCATGGATTCTAAGGCTGGTGGTCATTCAGGACGCTTCTATCTAAAAACCACCTGACACTGATCAAGCATTTTGTACATGTTAGTCACTATTCCAGTGTTATCTCCACTGGTGCAGGGTTTCTCAACCTTGGCACTATTGCCATCTGGGGCTGGGAAATTCTTTACTGTGGGGCCTGCCCTGTGCAATGTAGGATGTTTAGCAGCATCTCTGGATTCTATGCACTAGATGCCAGTGGCACCTCCTTCCCGGCTTGTGACCACCAAAAATATCTCCAGATATTTCCAAATGGCCTATGGGGGTAGAAGTTACCCAAGATTGACAATCACTGTATTAGTCCATTTAATTCTTCACAAAAACCCTATGATGTAAATACTCTTTTTTTTTTTTTTTTTTTTGAGACAGAGTCTCGCTCTATTGGCAGGCTGGAGTGCAGTGGCACAATCTCAGCTCGCTGCAACCTCTGCCTGCCGGATTCAAGCAATTCTCCTGCCTCAGCCTCCTGAGTAGCTGGGACTACAGGTGCACACCACCACGCCCAGCTAACTTTTGTATTTTTAGTAGAGACAGGGTTTCACCATGTTGGCCAGTATGGTCTCAATCTCTTGATCTCATGATCTGCCCGCCTCAGCCTCCCAAAGTGCTGGGATTACAGGGGTGAGCCACTGTGCCTGACCAACGACTCTTATTATTATTTCCATTTTATCAATGAGGAAAGGAAACGTAACACAAAAATTAACTTCCTCAAAGTTACACCAAATAGGTGCTGCAGCTGGGATTCAAATCCAGGCCCCTGACTCTAAGCTGAACCATGAGAATCTGCTGCCTCCCAACTAACTACTTATCTACATGGGTTCTACGCAGTATGATCCTCTGGGCCCTCAGGAACTCTCACATTCTTTTGGCCTGATTCCTGCAG
Seq C2 exon
ATACTGGGATCTGAAAAGTGGGGTTTGCACACGAATCTTCGGTGGTCACCAGGGGACTATCACTTGCATGGACTTGTGTAAGAACAGGCTCGTATCTGGAGGAAGAGATTGCCAGGTAAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000171931:ENST00000301938:7
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0040027=WD40=PU(89.2=48.5)
A:
NA
C2:
PF0040027=WD40=PD(8.1=7.1),PF0040027=WD40=PU(91.9=81.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains