HsaINT0033086 @ hg19
Intron Retention
Gene
ENSG00000142789 | CELA3A
Description
chymotrypsin-like elastase family, member 3A [Source:HGNC Symbol;Acc:15944]
Coordinates
chr1:22333371-22334008:+
Coord C1 exon
chr1:22333371-22333507
Coord A exon
chr1:22333508-22333865
Coord C2 exon
chr1:22333866-22334008
Length
358 bp
Sequences
Splice sites
5' ss Seq
ATAGTACGT
5' ss Score
6.05
3' ss Seq
GGTGCTTTTTATCCTTGCAGCCA
3' ss Score
8.38
Exon sequences
Seq C1 exon
CAATGACATCGCCCTCATCAAGCTCTCACGCAGCGCCCAGCTGGGAGATGCCGTCCAGCTCGCCTCACTCCCTCCCGCTGGTGACATCCTTCCCAACAAGACACCCTGCTACATCACCGGCTGGGGCCGTCTCTATA
Seq A exon
GTACGTGCTGACTTCTCTAGCTGGCCACAGAGACAGTGGCAGAAAGACAGGGCCTGGGGGCTGCAGGTTGAAGGTAACACCAAGACCGGACCTTGTACTTTTCTCCCATTTCTCTCCAGCTGCAGCCTTCTTCCATCAACCTCCAAAACACGAATGTGGTCAATTGCACATGTTTTGGTATCTTCTGTGTGCCACGTGCTAGGGATGTAATGGTGCACAAAGCATGCAGGACCATTTAGCGGGTGGGAGGAGAGTCCTCATCAGGGCAGAAGAACTGTGGGCCTTGAATGCCCCCTTCCTCTGGGGCACCTAGCGGTGTGCCCCCAGACCCCTGACTCGGTGCTTTTTATCCTTGCAG
Seq C2 exon
CCAATGGGCCACTCCCAGACAAGCTGCAGCAGGCCCGGCTGCCCGTGGTGGACTATAAGCACTGCTCCAGGTGGAACTGGTGGGGTTCCACCGTGAAGAAAACCATGGTGTGTGCTGGAGGGTACATCCGCTCCGGCTGCAAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000142789-CELA3A:NM_005747:5
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=FE(19.6=100)
A:
NA
C2:
PF0008921=Trypsin=FE(20.0=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATGACATCGCCCTCATCAAGC
R:
CGGAGCGGATGTACCCTCC
Band lengths:
270-628
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)