HsaINT0042482 @ hg38
Intron Retention
Gene
ENSG00000110925 | CSRNP2
Description
cysteine and serine rich nuclear protein 2 [Source:HGNC Symbol;Acc:HGNC:16006]
Coordinates
chr12:51067673-51074082:-
Coord C1 exon
chr12:51073823-51074082
Coord A exon
chr12:51067970-51073822
Coord C2 exon
chr12:51067673-51067969
Length
5853 bp
Sequences
Splice sites
5' ss Seq
AAGGTGCCT
5' ss Score
5.39
3' ss Seq
CCTTTCCTGTCTCTTGGCAGCTG
3' ss Score
11.87
Exon sequences
Seq C1 exon
CCACATCCATCCTGAAGCGGCAGAAGCAGCTGCGGAGGAAGAATGTACGCTTTGACCAGGTGACTGTATACTACTTTGCCCGGCGCCAAGGTTTTACCAGTGTGCCCAGCCAGGGTGGTAGCTCTCTGGGCATGGCCCAGCGCCATAACTCTGTACGGAGCTATACACTCTGTGAGTTTGCCCAGGAACAGGAGGTGAACCATCGAGAGATTCTGCGTGAGCACCTGAAGGAAGAGAAACTCCATGCCAAGAAAATGAAG
Seq A exon
GTGCCTAAGTGTTCTGGGATCTACTGCTGTCCATGTAGGAAACCATTTAGGTTCATTGGTTGGTTGGTTGATTGATTTTTTTTTTTTTTTTTTTTCTGGGACAGAGTCTTGCTCTGTCGCCCGGGCTGGAGTGCACTGGCATGATATTAGCTCACTGCAACCTCGGCCTCCCCAGGTTCAAGCGATTTCTTGTGCCTCAGCCTCCCGAGTAGTTGGGATTACAGGTGTGCATCCGTCTTGTTTTTGTATTTTTAGTAGAGACAGGGTTTTGCCATGTTGCCCAGGCTGGTCTCGAACTCCTGGTCTCAAGTGATCTACCTGCCTCGGCCTCCCAAAGTGCTGAGACTACAGGTGTGAGCCACTGCACCCAGCTGATTTTTTTTTTTATTTGACTGTTGTCCTTGGGGTATAGAGATTTCAACTCTTTCTAATGAAAAATCTCAGATTTGAAATCAAATCTCAGTCCAAGACTCCCGTCTTTGCATCTGGCAGGGGAGTCTACCAGATATAGCAAAATGGCTTCCCTAGAATTTCCCCCTCCCAAACCCCCACTGCCTCCCTCAATTTTATGTATGTATGTATGTATGTATGTATGTTTTCTTTTGAGACAGGGTCTCTCTCTGTCACCCAGGCTGGAGTGCAGTGGCTCAATCACAGCTCATTGCAGCCTTGAACTCCTGGCCTCAAGCCATCTGCCAATCTCAGCCTCCCAAGTATCTGGGAACCACAGGCTCATGCCACCATGCCTGGCTAGTATTTTTTTTAATAGTAGTGGGATCTTGCAACGTTGCCCAGGTTGGTCTCAATTCCTGGGCTCAAGTGGTCCTTCCCTCTTGACCTCCCAAAGTGCTGGGATTACAGGCATGAGCCACCATGCCCAACACCCCCGCCCCCAATTTATTTTTAAGTTTAAAATATGAATACGTGAAGGCGTTCAGGTCTGTCACCCTGGAACTCAAGGAAGCACAATTTTCAATTTCTGGTCAAATAATTGTCCCTTGGCCGGATGCACAGAACAGGTTTTGGATATTTCACAGTCTCTGAAAGGATCCTGCTGTTTCTATAATCCCCATCACCCTTACGTGATAATCTTGTAGATACAAACAGCATTATCAAATAGTTATTTAGATTTGTATAATACTGTGCCTGCCACCTGATACAGCACCACCTCTTCTTCGAGAGAGAGAGGCTGGGAAAAGACCCACCTTACATGGCTCTTCATAGCCACTCTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGAGACGGAGCCTAGCTCTGTTGCCCAGGCTGGAGTGCAGTGGTGCGATCTCGGCTCACTGCAAGCTCCACCTCCCGGGTTCACACCATTCTCCTGCCTCAGCCTCCTGAATAGCTGGGACTACAGGTGCCCAACACCACACCCGGCTATTTTTTTTTTTGTATTTTTAATAGAGACGGGGTTTCACCATGTTAGCCAGGATGGGTTCGGTCTCCTGACCTCGTGATCTGCCCACCTCAGCCTCACAAAGTGCTGGGATTATAGGCGTGAGCCACCGCACTTGGCCACCCATTTTTCATCTTAGTACTGTTTGGTATTCCCACAGCCATAGTTGCTACTACCTCTCAAAAATTTCTCCCAGAGATCCTGATTCCAAATTTGAAGAACACCAGTTTAAGCCTGGCCAGGTTTCTTTGAAGCCCAAAGCATGCTGACCCATATTAAAACAGGTAGCTCCATTATTTCCAGAGTCATGAGAGAGACACGTTAGAATGTGGTGGAGTTGGAGACTGGTGGCAGAGGATGTAGGCTAACCAGAGCATCTCATTCCTTTCTTTCTCTGAGAGCTGTATGTCTACTTCCCTCAGACTATTCCTAAAGCCCTACACCTGTTTTTCTCACTCTAGAATGACATTCAGGCTTCCCTTTCCTCTGTCTGAGGAATTCCATCACTGACCCTGTCACCTTCCAGCTGCCGTAGCAACAGCTGGGCAAATAAACACTGTTCTCATCAATTGCAGTGAAGGCATTCCTTCCTTTCCCTAGAAGAAAACTCCACTCTCCTAAATCTGGCAGAGGAATGATCTGTCAAAACAGTATACCATCCTGTTCTGTGTTCTCCACTTACAGGAATTCTAGGGACGAAGCCAGGCAAACCCAAGACAGATACAGGAGCTCTACTTGTTAGCAGGATGTTTAGTGAGCACCAGCAGTGATGACATCTAATACAGCACTTTGTTTTTTTAAAGATGGGGTCTCATTTTGTTGCCCAGGCTAGTCTCAAACTCCTGGGCTCAAGTGATCCTCCCACCTCAGCCTCCCAAGTAGTTGGGACTACAGGTGTGGGCCACTGCACCAGGCTTATCTTTATATGTCAAGAGGAATCCCTTGCTTTACCTTACCTAGTTTATTCTTTGCTTAGATTTTTTTTTTCTCTTGAAACAGGGTCTCACTCTGTCATCCAGGCTGGAGCACAGAGGCAATCCTCAAGCGATCCTCCTGCCTTAGCCTCCCAAATAGCTGGGACTGCAGCTGCACCCACCACCATGCTTGGTTAATTTTTGTAGGTTTTTTTTTTTTTTTTTGATGCAGGGTCTCACTCCGTTGCCCAGGCTGGAGTGCAGTGGCGCAATCTCGGTTAACTGCAACCTCCGCCTCCCAGGTTCAAGCGATTCTTGTGCCTCAGCCTCCCTCAACTGAGATTATAGGCATGTACCACCATGCTGGGCTAATTTTTTTATTTTTAGTAGAGACGAAGTTTTGCCACGTTGGCCAGGCTAGTCTCGAAGTCCTGGCCTCAAGTGATCCACCCGCCTCGGCCTCCCAAAGTGCTGGGATTACAGGAGTGAGCCACCATGTCCGGCCAGTTTTTGTAGAGATGGGGTCTTGTTCTGTTGCCCAAGCTGGTCTCGAACTCCTGGTCTTAAGCGATTCTTCCACCTTAGTCTCTCAGAGGTGCTGGGATAACAGTCATGCGCCACTGCACCAGGCCTGTTTTTTAGCTCTCTATAAGGGAGGCAGTTGGTTTCAAAAAATGTACATTCTGCATCTCTCATGTACCATCTAATGTTTGTCTTCCTTTGGGGTTGTTCCAGCAGCTGCTTGGTGTTCCGCAACTTTAGTTAACTATAATTTTTCTAATATTTTTATTTCATTTTTTGTATTTTGGCCTGTTATCCATATGGAACTCATTATCATGAATAGTATACATTGGGAATCTTTTTTCCCCCAGAAAATATCCACTTGTTCCAATACGATTTAATAACTAGAAGACTCTTTTCTCACTGATTTGAAATGCCACTTCTATCTCGATATTTAAATTCTCACATCTATATGAGTGTCCTCGTGTTACATCTCTAATCCCTTGCCTATGAGAGGACAGCAGGAGGGGGTATGCTTAGGGGGAGGTCAACCCTGGAGATGTAGACAGGAGCAATCCTGAGATAAACAGAAAGGCCCTTTGTAGTTGGCCTGCCTAGTACCGAAATCACTGACTAGGAAACCTCCAGAAGCCCCACTTTACTTCTCTTCATTTCTCTACCACCTCCCCCACAAACAAGAAAACCAGGTGTGTAGCTGATTACCCAAGCCCATTGCATCACATCTCTCCCAGGAGTTGTTCCTTTAGCAGCTCTACTCTGGTTGTCTGATGAAATCAACCAAAGGCTCCAGTCACGTGGCTTTCATCCTGCTAGCAGCTTCCAGAGCCCCAGGGATTATGAGGCCTCATTTTCTTGAGTTCTCTAGTGAGTTTTCAGAACTCTTTCAGCCACGGCTTGTCTTCAATCTGTCCTTCCACCAAGACTCCCTTTCTTGGCTCTCTATCCATCTCAGCCCAGAAAACCCAGATTTCTCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCTGAGGCGGGCGGATCATGAGGACAGGAGATCAAGACCATCCTGGCTAACACAGTGAAACCCCGTCTCTACTAAAAATACAAAAATACAAAAAATTAGCGAGGCGTGGTGGCAGGCGCCTGTAGTCCCAACTACTCGGGAGGCTAAGGCAGGAGAATGGCGTGAACCCAGGAGGCGGAGCTTGCAGTGAGCCGAGATTGCAGCACTGCACTCCAGCCTGGGTGACAGAGTGAGACTCAGTCTCAAAAAAAAAGAAAAAAAAGAAAAAAAAAAACCCAGATTTCTGCCTGTACATAGTACGCTCAGTATTATTGATACCACCTTTCCTCACATACAGCTTTTCTTTGAAGTCAAATAAAAAAGGATTAGGCCTGGTGCAGTGGCTCAGGCCTGTAATTATAGCACTTAGGGAGGTGGAGTTGGGTGTATCAGTTGAGGTCGGGAGTTCGAGACCAGCCTGGGCAACATTGTGAAACCCTGTCTCTACTAAAAATACAAAAATTAGCTGAGCATGGTGGCAGGAGCCTGTAATTCCAGCTACTTGGAAGGCTGAGGCAGGAGAATCACTTGAACCCAGGAGGCAGAGATTGCAGTGAGCCGAGATCATGCACTGCATTCCATCCTGAGCGACAGTGAGACCCTGTCTCAAAAAAAAAAAAAAAAAAAAGAAAGGAGAAGGAAGCCGGGCACGGTGGCTCATGCCTGTAATCCCATCACTTTGGGAGGCCGAGGTGGGCAGATTACAAGGTCAGGAGATTGAGACCATCCTGGCTAACACGGTGAAACCCCATGTCTACTAAAAATACAAAAAGTTAGCCGGGCGTGGTGGCAGGTGCCTGTAGTCCCAGCTACTCGGGAGACTGAGGCAGGAGAATGGCGTGAACCCAGGAGGTGGAGCTTGCAGCGAGCTGAGATCACGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAATGAAAAAAGAAAGGAGAAGAAATACATTTTTTCTCGGCCAAGGGCTTTCTTTAATACCTGTTAATATATTTGCTTTTTCTCCTTACAGTAGAATGAAGCTCTTTAGTGCATGCACAGATAATTGTTCACACTGTGGGGATTTGGGTTCATTGATTAAGACCTGGTAGCCTTTTACTACACTTTAATTTGCCCTTTTTTTTTCAAGAAGGTAGTTTTGCATTCAGTGGGTGCAAGTTGAAGGGTGTTTCACATTTTTCTGTATATCCAAGGATCATCCAGTCATTCACATACCTTTTCCTCTCTGTGTTAGAAGGCAAGTGAGTGTAAATTAGGGGATACATGTCTGGAAATAGACGGTATGTTTGTGGAAATAGATTTTCGTGTAGGAGGGAAGATGAGACGGGTTTTTGAGAAGCTTGGACCCAGAAAGGTGATGGTACGTAAGATTTCCCATCTTCCCACTCTGGATTTATTCTTTTGACTTGTGCTAGTGAATATAGCAGCCAGTAGTCACATACGGCTATTCAATTAAAATTATGTAAATTGGGCTGGCACAGTGGACCCCAGCACTTTGGGAGGCCGAGGTGTGTGGATCACTTGAGGCCAGCAGTTCAAGACTAGCCTGGCCAACACAGTGAAACCCTGTCTTTACTGAAAATAGAAAAAATTAGCCAGGCTGGTGACTCACGCCTGTAATCCCAACTACTTGGGAGGCAGGAGAATCGCTTGAACCCGGGAGGCGGAGGTTGTAGTGAGCCAAGACTGCACCACTGCACTCCCGCCTGGACGACAGAATGAGACTTTTGTCTCAAAAAAATAAATAAAATGACAGTTTTCCAATTGCTGCATTTCTAGTGCTCAGTAGCCACATGTGCTAGTAGCTGCCATCATTTTGGACAGCACAGATATTCCCATGATTGCAGAAGGTTCAAGGGACAGTGCTGCTCTGGGATGGTCACTGAGGAGGTGCATGCCGCTCATGTCTATGAGGCTAACCTTTCCTGTCTCTTGGCAG
Seq C2 exon
CTGACCAAGAATGGGACAGTGGAGTCGGTGGAGGCTGATGGCCTGACGCTGGATGATGTGTCAGATGAAGATATTGATGTGGAAAATGTGGAGGTGGATGATTACTTCTTCCTGCAGCCTCTGCCCACCAAACGGCGACGGGCCCTGCTGAGGGCTTCTGGGGTCCACCGTATTGATGCTGAAGAGAAGCAAGAACTTCGAGCCATCCGCCTGTCACGGGAAGAATGTGGTTGTGACTGCCGACTGTATTGTGACCCAGAAGCGTGTGCCTGCAGCCAGGCTGGGATTAAATGCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000110925:ENST00000228515:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.270 A=NA C2=0.023
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development