MmuINT0043183 @ mm10
Intron Retention
Gene
ENSMUSG00000044636 | Csrnp2
Description
cysteine-serine-rich nuclear protein 2 [Source:MGI Symbol;Acc:MGI:2386852]
Coordinates
chr15:100484450-100488204:-
Coord C1 exon
chr15:100487945-100488204
Coord A exon
chr15:100484747-100487944
Coord C2 exon
chr15:100484450-100484746
Length
3198 bp
Sequences
Splice sites
5' ss Seq
AAGGTGCCT
5' ss Score
5.39
3' ss Seq
CCTTGCCTGTCTCCTGGCAGCTG
3' ss Score
11.71
Exon sequences
Seq C1 exon
CAACATCCATCCTGAAGAGGCAGAAGCAGCTACGGAGGAAGAATGTCCGCTTTGACCAGGTGACTGTGTACTACTTCGCCCGGCGACAGGGCTTCACCAGCGTGCCCAGCCAGGGTGGGAGCTCCTTGGGAATGGCCCAACGCCATAACTCTGTACGCAGCTACACCCTCTGTGAGTTTGCGCAAGAGCAGGAGGTGAACCATAGAGAGATTCTCCGTGAGCACCTGAAGGAGGAGAAACTTCACGCCAAGAAAATGAAG
Seq A exon
GTGCCTGCCTGTGGGCCTTGGGCTCTGGTGGGGTCTGGTGAAATGAAGGTGCCTGCCTGTGGGGCGTGGGCTCTGGTGGGGTCTGGTGAAATGAAGGTGCCTGCCTGTGGGGCGTGGGCTCTGGGGAAATGAAGGTGCCTGCCTGTGGGGTGTGGGCTCTGGTGGGGTTTGGTGAAATGAAGGTGCCTGCCTGTGGGCTCTGCTCTGCTGCCTCTTGAGTGTCGAGGCCAAGTGGGAACCCTGAGTCCAATGGTCCAGAGAGGCTGGTCTGCTGCAGTACTGATCTGGGCAAGCAGAGAGTGCAAGCCTTGTTTCTAATGAGAAGTCTTGGATGTTCAAATATGGTCTCCTCTTGTCCTCTCTGGTGGCAGTGTCCACCAGAGATAAAAACAAAAAACAAAAAAAAAAACCACCTTCTCTTCACAGCCCCTTACTTCTTGTTACAAGAATGCTTTTTAAAAGCATGATGTGAATACTCAAAACTTGTCAGTCACCCAGAAAATACAAATCTCAGTGTGTCCATGGTTGTTCTGAATAGAGCAGGTTCCATGGGTCTTGCATGGCCCTCTGCAATTTGCACATAGTCACCCCAGAGGGCTGACACAGTGTCCTTGGTGCAGAGAGTAGCATTATTTCATGGTCAGATTCATAGACAGGGATACCAGTAGGTTCCGGAGAGATGACTCAGCACTTAAGAGCAGTGGTGGCTGGGTTTGGTGCACAGGGCTCACATGCTGGTTCCCATGGCTGAACTGAACGTGCTGTGTAGACCAGGTTGCTTCAGGTCACTGATAGCTTCCTACCTCTCTCCTAAGTACTAGTATTAAAGCATACACTACCAGATCTGGCCCAATAAATCAGTCTTTTAAAAAAAAAATACCCCACCTACTACATACACGTCACTGATAGCACCAAAAGACTCATCTGAGACACCCACACCCTGCCTTAGCACTATTGACCCTCTATCAATCGTTTCTGTGAGTTCTCAAATTTCCCAGAGCTGAGGGTACAGTGGTTAGAGCACTCACCTGGTGTTCATGAAGCCTCGGGTTAGAGAATATGAATGAGTTTCTCGACCCATCCATGAGGTAGCTGCAATATTTCTAGTGTGTAGACAATTGAGGCCTAGCAAGGTTGGACAAGGGTGGCAGGAGGCCAGGCCTCGCTAGTCTCATTCTTGGTGAGCTCTCGGCCTGCTCCGAAGGCCTCACACCTGTCACTCTAACAACAGTGACGTTCGGCCTCCCCTTTCTGCCTAGGAATTCTTTCACTGACCCTGTCTGTCACCTTTCTGTTGCTATAGCAACAGTTAGACAAACATTCTTTTCAGTTGCAGTGAAGGGTCTCTGCCCCTTTCCTGGAAGGCAGCTCCTCCACAGGAGGTGGAGGAGGGATGTGTCCTGTGTCCTGAGCAGGACGCACTGAGCACACCATGATGGCAGAGGGTGGCGGGAACCTGCCTTTCTCCCCAGGAAGGCTCCTGTCCTTAGCACTTAGAGGGGCACGGTCTTGAAATTACGTATGTACTGCATGTCTTGGGTGCCATTCCATAGTTCTTTCCCTTTGCAGCCCTTCCAGTCAACTGTTAGAGCACTGTAACCTTCACTACCTATAATCTTCTAATATTTTAGCTTTACTTTATCCATATGGGATTTATTATTGTAAGTAGTTTGGATTGGGTGGTGGTTGGTTTTTTTCTGGTTTTGTTTTGGGGTGGGTCTCATGGAGTTCCAGCAGGCCTTGAACTTGCTGTGGAGCAGGGCGTGGCTTTGAGCATTGCTCCTCTTGCCTCTACCACTTCCTCAGTGCCGGGATTATTAAGCATGAGCTACCTGCTATACCTGGCCTTAACTTTTCTCTGCACAAAAATATCTAGCTGTCCCAGCATTGTTTGATGACTGGATGCATTGCTCTGAAATGCCCCTTTTTGGAGACCTGAAGTCTCCTACTTCTGATGGCTTTCCTTTAGGAACAGTGGGAGTGCTGGGGACGAGCCAGTTTTGTGACACAAACAGGAACAATCCCAAGGTCTACAGAAAGGAACCTGGCAGTTCTTGTCTGGTGTATAGGTAATACTTAGAAGCCCATAAGCCCCACTCAGCTAGCTCCCCACAAGCAGTGAGGTGAACTGCTCATGGTGGCTCAAGCCTGTTGCGTCACCTCTCTCACAGGAGCTGTGCCTGTCCCAGCACAGTGGGTGTGTGATGAAATAAACTGAAGACTCCAGCCACTGGGCTTTCAGCCTGCTGGCAGCTTCCAGAGCCCCAGGGGCTGGGCCTCATCTTCTTTACTTAGATCCTCTAGTGAGTTTGAAAAACTCACTCAGCCAGAAATTGTCTTCAGCCTGTCCTTCTACGAGTCCTGCCTTGCTTTCTGTCCACCTTGGTGCAGAAAACCCAGCCTTCTGCTCTGATAGCACACACAGTTACTCACACTGCCATACCTCACACCGTTTTTCTTTGAAGTCAAATAAACAAGGACTAGGAGGAGGAAAGCACATACTTGTAGACCCTGGGATGGAAGTGGTGTTCAAATTGTTAGTAATAGCTGCCCTCCCTTAACAGAGGGATGCAGTTCTTCCTCCTGGACACAGGTGATTGTTTCCGGTGTGGGGATTCCATGGACAAACACCTGGGAAACTGGTGCTATACTCCAATGTACCCTTTCTCTCTGAAGGTAGTTTGGGCTTCTCCAGGGTTCAAGTTGAGGGCATTCTGCAAGGTTGCCAAAATGCTTAGGAACACACAGCCACTGGAACATCATTATCTCCAATGCAGGTGACAGTTTAGAAATGGAGGGAACGTTGTGGAAATGTTATCTTCTAGGAGGGAAGATGAGGCGTGTTAAAAATCCCTTTAGACAGGACCTTGCTGTGTTGCTCGCTCCCTAGCCTCTCCTTGTTAAGCAGCTGGGTGACAGCTCTGTGATGCCACACCTGGCAGAGACTGGTTTTTGAGGACCCAGAACTCAGAAAGGTGAAGGCTCAGGTTTTTTAATCGTGTCCTATACAGTCCAGTACAGCAACCATTAATTATTTTGGTTACTTAAATATAAAATTAAATAAAACCCAGTTCCTTGGTCTCCACATTTCTGGTGCTCGGCTATGAGACGACACAGCACCTGTCACTGCAAACCTCGGCGGACTCTCTAGTCACTGTTGCTAATGCTCCAAAGCTGACCTTGCCTGTCTCCTGGCAG
Seq C2 exon
CTGACGAAGAACGGGACCGTGGAGTCAGTGGAGGCCGACGGCTTGACACTCGATGATGTCTCGGACGAGGACATCGACGTGGAGAATGTGGAGGTGGACGACTACTTCTTCCTTCAGCCCCTGCCCACCAAACGGCGGCGGGCCCTGCTCAGGGCTTCCGGGGTCCACCGGATTGACGCCGAAGAGAAGCAAGAACTCAGAGCCATCCGCCTGTCTCGGGAAGAGTGTGGTTGTGACTGTCGGCTGTACTGTGACCCAGAGGCATGCGCCTGTAGCCAGGCTGGGATTAAATGCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000044636:ENSMUST00000061457:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.264 A=NA C2=0.010
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types