HsaINT0042482 @ hg19
Intron Retention
Gene
ENSG00000110925 | CSRNP2
Description
cysteine-serine-rich nuclear protein 2 [Source:HGNC Symbol;Acc:16006]
Coordinates
chr12:51461456-51467865:-
Coord C1 exon
chr12:51467606-51467865
Coord A exon
chr12:51461753-51467605
Coord C2 exon
chr12:51461456-51461752
Length
5853 bp
Sequences
Splice sites
5' ss Seq
AAGGTGCCT
5' ss Score
5.39
3' ss Seq
CCTTTCCTGTCTCTTGGCAGCTG
3' ss Score
11.87
Exon sequences
Seq C1 exon
CCACATCCATCCTGAAGCGGCAGAAGCAGCTGCGGAGGAAGAATGTACGCTTTGACCAGGTGACTGTATACTACTTTGCCCGGCGCCAAGGTTTTACCAGTGTGCCCAGCCAGGGTGGTAGCTCTCTGGGCATGGCCCAGCGCCATAACTCTGTACGGAGCTATACACTCTGTGAGTTTGCCCAGGAACAGGAGGTGAACCATCGAGAGATTCTGCGTGAGCACCTGAAGGAAGAGAAACTCCATGCCAAGAAAATGAAG
Seq A exon
GTGCCTAAGTGTTCTGGGATCTACTGCTGTCCATGTAGGAAACCATTTAGGTTCATTGGTTGGTTGGTTGATTGATTTTTTTTTTTTTTTTTTTTCTGGGACAGAGTCTTGCTCTGTCGCCCGGGCTGGAGTGCACTGGCATGATATTAGCTCACTGCAACCTCGGCCTCCCCAGGTTCAAGCGATTTCTTGTGCCTCAGCCTCCCGAGTAGTTGGGATTACAGGTGTGCATCCGTCTTGTTTTTGTATTTTTAGTAGAGACAGGGTTTTGCCATGTTGCCCAGGCTGGTCTCGAACTCCTGGTCTCAAGTGATCTACCTGCCTCGGCCTCCCAAAGTGCTGAGACTACAGGTGTGAGCCACTGCACCCAGCTGATTTTTTTTTTTATTTGACTGTTGTCCTTGGGGTATAGAGATTTCAACTCTTTCTAATGAAAAATCTCAGATTTGAAATCAAATCTCAGTCCAAGACTCCCGTCTTTGCATCTGGCAGGGGAGTCTACCAGATATAGCAAAATGGCTTCCCTAGAATTTCCCCCTCCCAAACCCCCACTGCCTCCCTCAATTTTATGTATGTATGTATGTATGTATGTATGTTTTCTTTTGAGACAGGGTCTCTCTCTGTCACCCAGGCTGGAGTGCAGTGGCTCAATCACAGCTCATTGCAGCCTTGAACTCCTGGCCTCAAGCCATCTGCCAATCTCAGCCTCCCAAGTATCTGGGAACCACAGGCTCATGCCACCATGCCTGGCTAGTATTTTTTTTAATAGTAGTGGGATCTTGCAACGTTGCCCAGGTTGGTCTCAATTCCTGGGCTCAAGTGGTCCTTCCCTCTTGACCTCCCAAAGTGCTGGGATTACAGGCATGAGCCACCATGCCCAACACCCCCGCCCCCAATTTATTTTTAAGTTTAAAATATGAATACGTGAAGGCGTTCAGGTCTGTCACCCTGGAACTCAAGGAAGCACAATTTTCAATTTCTGGTCAAATAATTGTCCCTTGGCCGGATGCACAGAACAGGTTTTGGATATTTCACAGTCTCTGAAAGGATCCTGCTGTTTCTATAATCCCCATCACCCTTACGTGATAATCTTGTAGATACAAACAGCATTATCAAATAGTTATTTAGATTTGTATAATACTGTGCCTGCCACCTGATACAGCACCACCTCTTCTTCGAGAGAGAGAGGCTGGGAAAAGACCCACCTTACATGGCTCTTCATAGCCACTCTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGAGACGGAGCCTAGCTCTGTTGCCCAGGCTGGAGTGCAGTGGTGCGATCTCGGCTCACTGCAAGCTCCACCTCCCGGGTTCACACCATTCTCCTGCCTCAGCCTCCTGAATAGCTGGGACTACAGGTGCCCAACACCACACCCGGCTATTTTTTTTTTTGTATTTTTAATAGAGACGGGGTTTCACCATGTTAGCCAGGATGGGTTCGGTCTCCTGACCTCGTGATCTGCCCACCTCAGCCTCACAAAGTGCTGGGATTATAGGCGTGAGCCACCGCACTTGGCCACCCATTTTTCATCTTAGTACTGTTTGGTATTCCCACAGCCATAGTTGCTACTACCTCTCAAAAATTTCTCCCAGAGATCCTGATTCCAAATTTGAAGAACACCAGTTTAAGCCTGGCCAGGTTTCTTTGAAGCCCAAAGCATGCTGACCCATATTAAAACAGGTAGCTCCATTATTTCCAGAGTCATGAGAGAGACACGTTAGAATGTGGTGGAGTTGGAGACTGGTGGCAGAGGATGTAGGCTAACCAGAGCATCTCATTCCTTTCTTTCTCTGAGAGCTGTATGTCTACTTCCCTCAGACTATTCCTAAAGCCCTACACCTGTTTTTCTCACTCTAGAATGACATTCAGGCTTCCCTTTCCTCTGTCTGAGGAATTCCATCACTGACCCTGTCACCTTCCAGCTGCCGTAGCAACAGCTGGGCAAATAAACACTGTTCTCATCAATTGCAGTGAAGGCATTCCTTCCTTTCCCTAGAAGAAAACTCCACTCTCCTAAATCTGGCAGAGGAATGATCTGTCAAAACAGTATACCATCCTGTTCTGTGTTCTCCACTTACAGGAATTCTAGGGACGAAGCCAGGCAAACCCAAGACAGATACAGGAGCTCTACTTGTTAGCAGGATGTTTAGTGAGCACCAGCAGTGATGACATCTAATACAGCACTTTGTTTTTTTAAAGATGGGGTCTCATTTTGTTGCCCAGGCTAGTCTCAAACTCCTGGGCTCAAGTGATCCTCCCACCTCAGCCTCCCAAGTAGTTGGGACTACAGGTGTGGGCCACTGCACCAGGCTTATCTTTATATGTCAAGAGGAATCCCTTGCTTTACCTTACCTAGTTTATTCTTTGCTTAGATTTTTTTTTTCTCTTGAAACAGGGTCTCACTCTGTCATCCAGGCTGGAGCACAGAGGCAATCCTCAAGCGATCCTCCTGCCTTAGCCTCCCAAATAGCTGGGACTGCAGCTGCACCCACCACCATGCTTGGTTAATTTTTGTAGGTTTTTTTTTTTTTTTTTGATGCAGGGTCTCACTCCGTTGCCCAGGCTGGAGTGCAGTGGCGCAATCTCGGTTAACTGCAACCTCCGCCTCCCAGGTTCAAGCGATTCTTGTGCCTCAGCCTCCCTCAACTGAGATTATAGGCATGTACCACCATGCTGGGCTAATTTTTTTATTTTTAGTAGAGACGAAGTTTTGCCACGTTGGCCAGGCTAGTCTCGAAGTCCTGGCCTCAAGTGATCCACCCGCCTCGGCCTCCCAAAGTGCTGGGATTACAGGAGTGAGCCACCATGTCCGGCCAGTTTTTGTAGAGATGGGGTCTTGTTCTGTTGCCCAAGCTGGTCTCGAACTCCTGGTCTTAAGCGATTCTTCCACCTTAGTCTCTCAGAGGTGCTGGGATAACAGTCATGCGCCACTGCACCAGGCCTGTTTTTTAGCTCTCTATAAGGGAGGCAGTTGGTTTCAAAAAATGTACATTCTGCATCTCTCATGTACCATCTAATGTTTGTCTTCCTTTGGGGTTGTTCCAGCAGCTGCTTGGTGTTCCGCAACTTTAGTTAACTATAATTTTTCTAATATTTTTATTTCATTTTTTGTATTTTGGCCTGTTATCCATATGGAACTCATTATCATGAATAGTATACATTGGGAATCTTTTTTCCCCCAGAAAATATCCACTTGTTCCAATACGATTTAATAACTAGAAGACTCTTTTCTCACTGATTTGAAATGCCACTTCTATCTCGATATTTAAATTCTCACATCTATATGAGTGTCCTCGTGTTACATCTCTAATCCCTTGCCTATGAGAGGACAGCAGGAGGGGGTATGCTTAGGGGGAGGTCAACCCTGGAGATGTAGACAGGAGCAATCCTGAGATAAACAGAAAGGCCCTTTGTAGTTGGCCTGCCTAGTACCGAAATCACTGACTAGGAAACCTCCAGAAGCCCCACTTTACTTCTCTTCATTTCTCTACCACCTCCCCCACAAACAAGAAAACCAGGTGTGTAGCTGATTACCCAAGCCCATTGCATCACATCTCTCCCAGGAGTTGTTCCTTTAGCAGCTCTACTCTGGTTGTCTGATGAAATCAACCAAAGGCTCCAGTCACGTGGCTTTCATCCTGCTAGCAGCTTCCAGAGCCCCAGGGATTATGAGGCCTCATTTTCTTGAGTTCTCTAGTGAGTTTTCAGAACTCTTTCAGCCACGGCTTGTCTTCAATCTGTCCTTCCACCAAGACTCCCTTTCTTGGCTCTCTATCCATCTCAGCCCAGAAAACCCAGATTTCTCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCTGAGGCGGGCGGATCATGAGGACAGGAGATCAAGACCATCCTGGCTAACACAGTGAAACCCCGTCTCTACTAAAAATACAAAAATACAAAAAATTAGCGAGGCGTGGTGGCAGGCGCCTGTAGTCCCAACTACTCGGGAGGCTAAGGCAGGAGAATGGCGTGAACCCAGGAGGCGGAGCTTGCAGTGAGCCGAGATTGCAGCACTGCACTCCAGCCTGGGTGACAGAGTGAGACTCAGTCTCAAAAAAAAAGAAAAAAAAGAAAAAAAAAAACCCAGATTTCTGCCTGTACATAGTACGCTCAGTATTATTGATACCACCTTTCCTCACATACAGCTTTTCTTTGAAGTCAAATAAAAAAGGATTAGGCCTGGTGCAGTGGCTCAGGCCTGTAATTATAGCACTTAGGGAGGTGGAGTTGGGTGTATCAGTTGAGGTCGGGAGTTCGAGACCAGCCTGGGCAACATTGTGAAACCCTGTCTCTACTAAAAATACAAAAATTAGCTGAGCATGGTGGCAGGAGCCTGTAATTCCAGCTACTTGGAAGGCTGAGGCAGGAGAATCACTTGAACCCAGGAGGCAGAGATTGCAGTGAGCCGAGATCATGCACTGCATTCCATCCTGAGCGACAGTGAGACCCTGTCTCAAAAAAAAAAAAAAAAAAAAGAAAGGAGAAGGAAGCCGGGCACGGTGGCTCATGCCTGTAATCCCATCACTTTGGGAGGCCGAGGTGGGCAGATTACAAGGTCAGGAGATTGAGACCATCCTGGCTAACACGGTGAAACCCCATGTCTACTAAAAATACAAAAAGTTAGCCGGGCGTGGTGGCAGGTGCCTGTAGTCCCAGCTACTCGGGAGACTGAGGCAGGAGAATGGCGTGAACCCAGGAGGTGGAGCTTGCAGCGAGCTGAGATCACGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAATGAAAAAAGAAAGGAGAAGAAATACATTTTTTCTCGGCCAAGGGCTTTCTTTAATACCTGTTAATATATTTGCTTTTTCTCCTTACAGTAGAATGAAGCTCTTTAGTGCATGCACAGATAATTGTTCACACTGTGGGGATTTGGGTTCATTGATTAAGACCTGGTAGCCTTTTACTACACTTTAATTTGCCCTTTTTTTTTCAAGAAGGTAGTTTTGCATTCAGTGGGTGCAAGTTGAAGGGTGTTTCACATTTTTCTGTATATCCAAGGATCATCCAGTCATTCACATACCTTTTCCTCTCTGTGTTAGAAGGCAAGTGAGTGTAAATTAGGGGATACATGTCTGGAAATAGACGGTATGTTTGTGGAAATAGATTTTCGTGTAGGAGGGAAGATGAGACGGGTTTTTGAGAAGCTTGGACCCAGAAAGGTGATGGTACGTAAGATTTCCCATCTTCCCACTCTGGATTTATTCTTTTGACTTGTGCTAGTGAATATAGCAGCCAGTAGTCACATACGGCTATTCAATTAAAATTATGTAAATTGGGCTGGCACAGTGGACCCCAGCACTTTGGGAGGCCGAGGTGTGTGGATCACTTGAGGCCAGCAGTTCAAGACTAGCCTGGCCAACACAGTGAAACCCTGTCTTTACTGAAAATAGAAAAAATTAGCCAGGCTGGTGACTCACGCCTGTAATCCCAACTACTTGGGAGGCAGGAGAATCGCTTGAACCCGGGAGGCGGAGGTTGTAGTGAGCCAAGACTGCACCACTGCACTCCCGCCTGGACGACAGAATGAGACTTTTGTCTCAAAAAAATAAATAAAATGACAGTTTTCCAATTGCTGCATTTCTAGTGCTCAGTAGCCACATGTGCTAGTAGCTGCCATCATTTTGGACAGCACAGATATTCCCATGATTGCAGAAGGTTCAAGGGACAGTGCTGCTCTGGGATGGTCACTGAGGAGGTGCATGCCGCTCATGTCTATGAGGCTAACCTTTCCTGTCTCTTGGCAG
Seq C2 exon
CTGACCAAGAATGGGACAGTGGAGTCGGTGGAGGCTGATGGCCTGACGCTGGATGATGTGTCAGATGAAGATATTGATGTGGAAAATGTGGAGGTGGATGATTACTTCTTCCTGCAGCCTCTGCCCACCAAACGGCGACGGGCCCTGCTGAGGGCTTCTGGGGTCCACCGTATTGATGCTGAAGAGAAGCAAGAACTTCGAGCCATCCGCCTGTCACGGGAAGAATGTGGTTGTGACTGCCGACTGTATTGTGACCCAGAAGCGTGTGCCTGCAGCCAGGCTGGGATTAAATGCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000110925-CSRNP2:NM_030809:3
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.253 A=NA C2=0.010
Domain overlap (PFAM):
C1:
PF098174=DUF2352=PU(32.6=35.6)
A:
NA
C2:
PF098174=DUF2352=PD(65.3=62.6)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)