GgaINT0045614 @ galGal4
Intron Retention
Gene
ENSGALG00000010971 | CSRNP3
Description
cysteine-serine-rich nuclear protein 3 [Source:HGNC Symbol;Acc:HGNC:30729]
Coordinates
chr7:19229467-19233871:-
Coord C1 exon
chr7:19233612-19233871
Coord A exon
chr7:19229764-19233611
Coord C2 exon
chr7:19229467-19229763
Length
3848 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAAA
5' ss Score
8.38
3' ss Seq
TTAATTGTTCTATGTAACAGATG
3' ss Score
7.76
Exon sequences
Seq C1 exon
CTTCTTCGATCCTGAAGAGAGAAAAGCGGAAGAGAACAAAAAATGTCCATTTTAACTGTGTTACTGTGTATTACTTCACGAGAAGGCAAGGCTTCACCAGTGTTCCCAGCCAAGGGGGAAGCACGCTGGGAATGTCCACTCGCCACAACAGTGTGCGCCAGTACACGCTTGGAGAGTTTGCAATGGAGCAGGAGAGGCTTCACCGGGAGATGCTGCGGGAACATCTAAGAGAAGAAAAACTCAATTCTCTAAAATTAAAG
Seq A exon
GTAAAACTCATTAACTTTGAGCCTTGCCTTATGTATTTCCATGAGCAGAGTCAGAGCTGTATGGGCCCAGTGTGCATCTTTTAAACAAAACAGCTTTCAACTCTAATTTCAGTGAGAGCAATTGCATTCTTCTTTATTTTATTTTTCTGAAGATATATATTTCTTTATATTATGCAGCACTGATGTAGCTCTTGCTAATGTGTACCTTAAAGTGCTTTAGAGGGATGTGGTTGTTTACTTTGTTTTCTACAGAGATGACAAAGGCAGAGAGGCACTGGAACTCAGTCTGAAATTAGAGTCTGGAACTGCCTCTGAGCCCTGGCAGAGTGCCCTATTTAGACAAAGGAATGATAACATCTTAAGTACAGAAAGCAAAACACCTTATTTTCTTTGCCAATTTAACTAAATTTGGCAAAAACCAGGGAAGAGCAATACAGAAAATGTTTTTAATGTACCAATTTATGCAATCATTTGTCTTTAGTATTTCACCGAAAGTTGTCTGTTAAGGAATAAACATCAGACGAATTAGCTTGATTCATCAATTCAGCTTGACTGTAGTTTTGAAGCTGTCCTTTTAATTCAACAGTGTAGAGGAAGGAAACTGTATTTGAGAAGAGAGGGGGATTGTATTTTTTGAAGTGTCCCTTCTGCGTCTTTCAATTCGGTAGCAAAATCTCAGGTTTTGTTATTTTGTTTAGTGAGCAAAAAACTTCCAGTATGACGGCATATGTTACCTGTATTTTCAGTTTGTTTTCAGATGAATTCTGTAATTAAAAGTGAACAGAGTTGGACTGTGGCTGAAGTGCTGTGCTCCACAGCTCCTATTTCTTGTGTGATACTGTAGTGCTTTGTCAGATAGTGTTATGTGTCTGCAAAGCAAATTGACACCCTCAAATCTCTTTGCCTTTTTCCCCTAGAATGAACGGTGTTCGTAACCTCTGTCTGTCTGAATACCTGAAGGAGTGCATATGACCCTTACTGCTACAGTTATTTTTTTATTCAGTCTCCTATTTTTTTTATTTGAATAGAAAAACAGATTCTTATATAATTGATAACAATTGAATTGTTTTTATGAAAAAACCCTACAAACTTAAAACCACTCAGGACAGAGGTGAATAAAAGAAAGACATTTTGACAGGCTGGAAACAAAAGGCTGGAGTTAATGATTTTATTGCTATTTAGAGATTATACCTCTAAACATCACAGGATCTTCAGAGCATCAAGTGGGAATTGAGCTGTGACTCTGAGTAGATCTCTTGGCTGACTTTGAGGAAGAGCTGTTTTGCTATTCACTTGATTTATAAATGAATGCAGAAAGGAAAGGCTGTAGATTTCTAAGGTGATCAGTCAGTGGTTGGTTTTAAAGTACTGCACATCTGCACAGAAAAATGAAGAAAATAAGAAACTGAAGGAAGGCAAAGTTTGTTCTGATTGAACAGATTGATTGAAGGACTGATTGAGAATGACTGTGCAAACAGAAAGTAGTATTTTCTGTGGTTTGTTCTGTTTTTAAATTTCAGCTTCCTGGATTAATTTTTTCCATCGGATTAAAATATGCAAGGTAGAACACATTGTCTTTTGTATAACTGGTTAAAAAAAAGACAGAAAAAAGAAATATGAATATTTTGGAATTGTGTCTTCGTAATGTTAGGTACTACTTATTATTTTCACTTGCTAAATAAAGGTGAGGAGACAAATATGAAATCTCTGTTAATTAAAAGCAGATGATAAAGACTTCACAGTCATCTTGAAGTCGCTGTAGTCATGTAAAAGCAGCACTTTGGTTTAAGCACTGCTGACAGTGGCATAAACGCTGTTAGCAGCAGAGTGTGAAAGTTTTAATGGCAATCTGAGCATAAAAGCCATCTTGTCAAGATGAAAGGTACAAGGTAGGCTTTACTTTAAATACGCTGTCGTTTGCAGAAACAGTATGAGTAAACACAACAGGTTAGCTGCAGTACTCTTTATTGCTTATTCATGAAGTCTCTTCAGATTAAGGTATTTTAAAATGATTTGCGTGACCCCGAGTGATGTTAAAGCCCCTGAGTCTGCAGACCAATAGATAAATCAGTACAGATTGTGCTTATTTTGAAAACAAGACAAATGCAAATGGAAAAAGATGTGGGTTTGTCTTTTGTGAATAATGTTCTAGCCCTTTTTCCATCTGTTGGGTGTTAGGGATTGTGCCTGAGAGGTATCACTGAGGAATGGTAAAATGTTAGGTAGCTGCTAAGAAAAATCTCTGCTATTTTGCAGTTTTCTATAAGCTAGGTAATCTAATGAAACCTAAATGTGATGATGGTGGTGCATGTTTTCACATGCATATATGTTTAACAATTTCAAAGAAAGGAAACTCGTGGTACACTAACTGCATTAGACTTCTATGACTTAATTGAATTAATGCAAGCTGATCATGGAACTATCAATAATTGGTAAATTAGTTTTAGTATTAAGGCAGAATATTCAGTTTTCACTTCTCCAGTCCTGTCTAGGAGTTTGCAGAAATCTTGAGCTTACTCTATTAATGTTGCTGGACAATACAAATGGAGGCCAGTAGTGTTATGATGTGAAATTATAATAGTTCAATTTTTCTACAGTGAACTGCAGGAAAAACTAAAAATATATTTTCTGTGCTGGTTTCTTTTGTGTTAAATTTGTAAGAGAGAGCTTCCAGCTGGGGCAGGCAGAGGTGTCCAACCTGAATTCATCACCTTTTACAAAGTTGAAGGCATTTTCATGCAAACTCTTCACGTGTTCATCAGCCTGTGCCATATCCCATTGTTATGAATTAACCTTTAGCTTTATGAGGAAAATGTTACCCATCTGCATATCAAATTTAATTCAGATAAGATGTTATGACAAGAAAACATGATGCTGTCCTGAGGTTTTGAATTGAAAAATATATTTGATAGTTCTTGATAATCTCCCATCTGTAGTTAACCAATTAATTGCTTGAGAAATGTTCAAAGCTTTCAGTTTCATTAATTGATTTGTTCTTGGTGTGACAAAATGGAGAAAAAAATCAGAGAATACAAGCGAGTCATCCAGCAAAGGAGTGAAAAGGAGCTGTGGTGCTCTGAAATTACAAATTTTGAACATGCCTGCATTTCAGATGAAGAAAGAGATGAATGTATGTGCATGTAAAACTAGGGATAACAGGCATGGTAAATAACATTAAACATGAACTAAAATGAAGGCACTAAGCTCTGAAGGCTGCATGCACTTACAGAAAAAGAGTAAGAATATACTGCAAAGAAACAATAATGCCTGTAAAAGTAGAACTGCATTAAATAAATATGGTGCTGAATTGCTAAGAAGAGATAATTACTGATCTAGGGAGAGATTTTCCTTGTGTTACATGTATGTATGCTGTATAAACATTGCAATCAGAATACTGAGGCTCCTCCCATCTGAGGGGGATGAGTGTCACTTTTAACCGGACAGTACAAGTCGGAAATAATGTTTTCTTCTGATTGTCTTATACAGTTATTATAAACATAAAATTGCAATTACAAAAAAAGTAAGTCGTCAGTAGGAGTTTATCATTGAGTAATTCAATTATGCTATAAAATGACAGAATGCAAAAGATTTTGTTATATAAATGGGAAATGAAAAATGCAGTTGAGAATGTAATAAAAGCAGCAAGAGTGGTACAGGTAAGATTCAGGACTGCTTTGTTAGACATAAGATGCATGTAGCTAGATGGTATAATTGTTTTGTTTCCTCACATATGGCTTTCCACATTCATAATTAATTTATTACATATTTATATAAATAAATATAGATACACATACATGACAACTGTGTAACTGTTGTTTAAGCACTTTGTTAATTGTTCTATGTAACAG
Seq C2 exon
ATGACAAAGAATGGTACAGTGGAATCTGAAGAGGCTAATACATTGACACTGGATGACATTTCTGATGATGATATTGATCTGGACAACACTGAAGTAGATGAGTATTTCTTTCTACAACCCCTGCCAACAAAAAAGCGAAGGGCACTGCTGCGAGCTTCTGGAGTGAAGAAGATTGACGTGGAAGAAAAACATGAGCTACGGGCCATCCGGCTGTCCAGAGAGGATTGTGGCTGTGACTGCCGTGTGTTTTGTGATCCAGAAACTTGCACTTGCAGTCTTGCAGGCATAAAGTGTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000010971:ENSGALT00000017873:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.414 A=NA C2=0.131
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]