HsaINT0042488 @ hg19
Intron Retention
Gene
ENSG00000178662 | CSRNP3
Description
cysteine-serine-rich nuclear protein 3 [Source:HGNC Symbol;Acc:30729]
Coordinates
chr2:166514271-166533118:+
Coord C1 exon
chr2:166514271-166514530
Coord A exon
chr2:166514531-166532821
Coord C2 exon
chr2:166532822-166533118
Length
18291 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAAA
5' ss Score
8.38
3' ss Seq
TTGCTGCTTTGTGTTTTTAGATG
3' ss Score
10.23
Exon sequences
Seq C1 exon
CTTCCTCCATTCTCAAAAGGGAGAAACGACTGAGGACAAAGAATGTACATTTTAGTTGTGTCACCGTGTACTACTTCACCAGGAGGCAAGGCTTCACAAGTGTGCCCAGTCAAGGGGGAAGCACCCTGGGGATGTCCAGCCGCCATAACAGCGTGCGCCAGTACACTCTTGGCGAGTTTGCAAGGGAGCAGGAGAGGCTCCACCGGGAGATGTTGAGAGAACACCTTAGGGAGGAAAAGCTGAACTCCTTAAAACTAAAG
Seq A exon
GTAAAAAACAAACTCATTTTCTGCAAAGTCTCATATCCTTACAGCAATTTGATTGAGTTAACCATTTTCATATTTATAATCACGAAACAAACTGGGCACTTTACATAACAGACTGCTTGCTGACATTTTTTTAAAGCAAAACGATATAGTCTGTTTGCTAAAAGCAATGTGGGAAACTTACCTGACATCATTTATTCATTCATTCCACCAATATTTACTATTGAATATTGTGAGATCATATGCCCTGTGCTTGGGCTAGGGCTAGTAGGAGACCAAAAATAGATGTGGTCCTCTCTCTATAGGAACTTATAGAATAGTAGAAAAGAAAAATATTAATAAAAGTGCTAAACAAAATAAAAGCACAACTTCATTGAGTGCAATGTAGAAGAGTTGCAAGGTATTATGAAAGTTTATAATAGGGAATTGATGTGGTCAAGGAGGTCAAGGAAAGCTTTCTCAAGGAAGTGAAATGAAAATCTGAAGAGGTGACTAGGCAAAGAGGATTGGCAAGAGCATTTCAGATATCAAGAAAAGCCAGAGCTACTGTATTAGTCTGTTTTCATGCTGCTGATAAAGACACACCCGGGACTAGGTAATTTATAAAGAAAAGGAGGTTTAATGAACTCAGTTCCATATGGCTGGAGAGGCCTCACAATCATGGCGGAGGGCAAAAGGCACTTATTACATGGCGGCAGCAAGAGGGAAAGTGAGAGCCAAGTGAAAAAGGAAACTCCTTATAAAACCATCAGATCTCATGAGACTTATCACTACCATGAGAACGCTATGGGGGAACTGCACCCATGATTCAATTATCCCCCACTGGGTCCCTGCCACAACACATGGGAATTATGGGAGTTACAATTCAAGATGAGATTTGGGTGAGGACACAGCCAAACCATATCAGCTACCTTGTGCCAGGAGGGAACACAGTGAGTCCACAATGGCTTGTGTGGCTGGAGCAGAGGCAAGAAGAATGAAGTAACGTGAAGGAGGCAGGAATGAGGCTTTGTAAACCATATTAAGGTATTTTTTCCTCTACTTCCTAAGGCCATCAAAAGTCGTCAAGAGTTTTAAGCTGAGTTGGAGTGGCAGAATATGATCCAGCTCACGAAATGGTGGGAGAAAAAGTTATGGGTAGGGTAAGTGGTGTTGAGACGGGATGGAATATATGAAGTTAGACCAGTTAGAAAGCTGTTACCACAGTCAGGGAGAGAGGTGACAGTAGGTTATATTAGACTGATGATGGTAGGGGAGTCGGAGAGAGATGAATAGAGGGAGAAATTTAGCAAACAAAATCAGCAGTGCTTAATGACAGGTTGGATTTAGGAGGAAGAGAAGGAGATTGTCAGGAATGACCCCTAAATTTCTGGCTTGCAAAACTGAATGGGTTGTAGGTGATAATACTGTTTTGCTATGACAAGGAACACAGGAAGGGGACAGGCTGGGGGTGGGATGTGGATAGTGAGATCATTTTTGGACATACTGAGTTTGAGGGGCTTTTGAGTTACCAAGAGATGTCAGGAAGGTATCCAAGTGGAAAAACTTATTTTTGTGCCACTTTAGAGATTAAATGGAGAGAATTATGACACTGAAAACATCTTTTGTCAACTAAAGACACTCTTCCGTTGGATTATCACCTTATCAATTGATAGGAAATATTTTTCCATCATTATTTAATGACAACGAAAATCTTTCTTAGGTAATCCAGCGTACTTAACATAAATGGTCGTTTGTTAAATACCTGAAGCACCATAAGCACAGCTGGGTTAGCATTACTTTTAGTTTTCAGAATAAAGTCAGTCAGCAGGGGTGTGATGTGTGTTTCAAAACATCTTGTTTTCATGTACTTTGCAATGTATGTACGTGCCATGTTCCCAATTTCATGGCAAAGCAGTCACTTAAATTAAGCTGGATACAAGCTAGCTTAGAGCATGTCTCTTACTTTGGCAGTATTTTTGGCAGGTTTCACTGAAAGTCTCGGGTCTCATTAAAAGTTTTGTCAGTAGCAATCCTCTATTATTGTTGTTGTTTTTTATGCTTGCTCTGCATGTAGCTTAATTTAGTAAAAATTCTCAGATTTGCTTCTCTTCTGAAATCCACCCTCTGCCTTTGTCACCCACGGCAAACCAACTCTACCCTCTACCCAAAGAGTGAAGTCGTTCTCCAAATTCAAGTATTGATAGCACAATAGTAATGGCTGCCAATTATTAAGTGATTTTATTTGCCAGGTACTTTATGAACATGATTTAATGTAATCCTCAGGAAGACCCAGTGGAATAGGTAAATTATTAGAACATGTTTACAACTGAGAAATAAAAGAAGCACAGAGATGTTAAGTTGGCTCATCCAAATAGAAAATGGATTCTATTATTACTTCCTATTCTTAAATTAATTGATTAGCTCCTATAGGCATTGAGAAAGACAGTCTTTGTACCTTTGGGGAGTCATCCTCTCTGGGGTCTGGTACTGTGTGCAGTGGTTTTTAACAGCTGGAGGACTGACACGCTGTCTGAGAACCAAAAGATTTATTGTGGTGAACTCCGAGACACGTGATACATGTGATGAATGTAAGGGGAAGTCACAAACCTACAGCAACCTTCTCCCATGTGCTATGTACTATAATTTGTATCCAGCTACTTCCATACATTTTTTAAATAAGCTGAATGAGAAAAGAAGGAGCCAAAAGACCACTCTATTACTAATTTGTTTTTTAAAATTCTGCTTATTGTTGGATGTTGGAGAGGCAATCATCTGAGCTAGTGTCAGGTATCAGTTTGTTATTGGTAATTGAAAACACAGTTTTCCCCTTTGGTGAAATGTAAACAAAAGGCATTTGGTTATAATCACTACTTCCAAATAAATACCAACCTAAAAGATAATGACATTTTGAGATGATCCAATCTTAACCTCACTGTGCTTAAAGTATTCAGAAACACATGTCACACAAAGCTAAAAGATCACAGCAATATGAACCAGCTTTTTAAAACTCTGAGGAGAATTAATGGAGAAAAACTTGTGTATATTTTCATTGTAATTCCTCTAGTATGTGAACTTTTATGATTTTTAAAATATTATTGACTGTGGTTTAGCTATCCAAAGCCAGCTACCCCAAAACATAGCTATTCAAAAATTTCACTCTGATACTTGAAATTTCACTTTTAATGTGGTATTTGTTTGAAATATAAACACCTCTGGTGTAAGTAACAAAATATAGATGCCCCTCAATTTGCAGTGGAATTATCTCCTGATAAACCCATCGTAAATTTAAAATATCATTAAGTTGAAAAATGCATTTAATACACCTAACGTACTGAACATTATGGCTTAACTTAGCCCACCTTAAACATGCTCAGAACACTTACATTGGCCTACCGGAGAGGAAGATCATCTGGCCACACAGTTTGCCATAAGGTAGCAGTTGTTCATCCTCATGATTGCATGGCTGACAGAGCTGTCCCAATACCCTGTATCATGCAAGGATATTGCTAGCCCAGCAAAAGATCAAAATTCAAAATTCAAAGCCTAGTTTCTACTGAATGTATATTGCTTTTGCACCATCATAAACTCATGAAAAGCCAAACCATCATAAACCAGGGACCTTTTGTAAATGTGGCTAAATTGATTTCATTATTTTGACTGGGGCAGCAGAAGGGTCATTGGTACGGAAAAGCATTCCAGAAAGAAAAGTAAGGATTGTTAAAGACAAACTTTGCTCACTGTGAGTTGGCCTGAGTTGGTCCTTTGTGAGTGACAGTGAATTGCCCGCTGAATAAGGAGTGAGGAAAGGCAGCATCTGACAAGAGAGACAGTTTCCAAACCCATCATTATGGAGACATGTAGTACACCATGGGAAACTCACCGAACTCAGAGCTAGATAGTTTTCCTTCTACTTCTTTGAGAACCAACAGCCCCAAAACAGGAAGAAGAAGTTCCTCTTTCCACTGTCCCTCTGTATCTTTCCAGGGTGTCTTTGCTGAGTTCCAAATAGAGAACACATTTATATAATGGCACCTCTCATAATGGGGCTTTAATAGAGAAATATGAGAAAAAGAAATACATGCATATACACTTCTAGATATTATAGTACATCTATAGATGTTATTTTGGAAACAAAATAAAGATGTTATTTTGAAAACAAAATAAAGATGTTATTTTGAAAACAAAATAAAAGTAGGAATGTATGTTTTGATCATAAAATTGCTCCTAATTTAGTAATTCATCTTCCAATCAAGTTATGATTTTAGATCTATCAAAAAATAATATGTATGTATTACCTTAGTAGAACAAATCCAATTCTATTTGGGGGAGTTCAAGTGTGTCTTTTTTTGTTAGTGGTGCTGGTCTTTCAAACATTGTCTATAAACAACTAATAGAGAAAACTGATTGAATAAAATGCATTTCTAGAAGAAATAAGTAGCTTTAGATTTCTAAATTACAGAGCACAGTTCTTCTTCTCTGTCAAGCCCATTCAAACATGTCATACTCTTCACAGTAATCAATGCAGTCATCTTAATACTATACACTTTTCCAAATTAAGTGCTTAGATTTCATCATCTGCACCACATTGTTGAACAATTACATTAGACTTTATTCCCAATTCACATGTATCTGTAAAGTGCATTAGGCAGCCATTTGTATGTTTTAAAGAACATTGGTGTTCCAATTGCCTCTGGGTTCTATCATACTGGATTCTACCACCTTGTTCTAAGAAATTTAATTTAGCTTTCACAGCTTTGGCTTGCCTTTTTATTTTTTCAACCCAAGTTGTTCCTCCTATTTCTGAGATCCAAGTGTCTATCTTCATTCTTGCTGCCATTTCTAATTGCTTTTCAGAATTATGTACTTTTCTCAAGTTTTCAGTCATATGTTCCTTGAGTAATGTGTGGCTGTTACTTGCCCTCCTTCCCTCATTTAAAAAACAAACAAAAAAAGTTGGCAGATGGTAACTCTTCCTTTAATGATTAACCTTTAAAAAAACTCTACATAAATTTTTTTCATCCCAAATCTCAGATTTATGACTGCTTTGCCCATTTAGTGACTTACCAATGCAATATTATAATTCTCCACTTTACCTCCAGCCCTGCCCTTTGTATCTCCTCAAAAGTCTTTTGATTTATCTTCCAGATAAGGGCCTTAAATGCCCTGATAGATAGAAGAGATTAGAGGCTTTTGAGAAACAGTTGAACTATATCAATCATCAACATTTTTGGATGTGTTATTAACTATTTCCCCATACTCTGATTCTTTATTAGATGTGTCAGAACCTGCTGGTCATGATATGTTTGAACTCCACTTATCCTTACAGAATTTCTGTTAGATTGTAGAGATTATGCCACAGCATACTTAGTGTCAGAGCTTCCGGAATGCATCCCCAAATGGAGGCCCACTTTAACATCAAATGGAAAACTTTGATGTGCTCAATACCTGCTCTGTCACATACACAACCTATTTTGACAGAAAATAAACCTAAACAAAATGATGGAGACTGAAAGGGTGGGCTGCAGCCCTGGGCAAATGCAATACATTTAAGAATATGTTCTTTCAAAATATTGTTGGTGTTTTAGTTTAAATGGAACAACTAAGCATATGTAATCAAATCTTTAGTTTCTTTCTCTGCAACAACCATTGGACTGTTAATTTAGGGAAGTCAATTGCACTGATTCTACTGATTAAAATGTGGGGTATATTCAGTGATGTGCTGGAGCCAGCTTGTTAAAGTTGCTCACTAAAGTGGATTGTGTACTTCTCTTCCCAATGGTAGCTTGAAATCAGCTATGATGGGTGTATTTAAACCATGAGATTTGGCAAACATGACAAATTAGATTTTTTTTTCCAGAGTGTCAGTTGTTAAATATTTACTAGCATTCTACTAGATCCGTCTGGCTTATTAGCTACCACTGAAAGAAGCGATGTTGGTCTAAATCAGAGGGTAGGAGAAAAAAATTTGAGAGGAAATTTTCATATGTCTTATATGTCGATACTATCATCATCCCTCCTGGTGACTGTGTGGTAATATGTATTCCAGGGTCCTATTGTGACTTCAGGTTGTTGAAATTCTCATAAGCTAACAAAACAACCAAACATTCCTAGTTCTTCGAGGGTATAATTAAATTGGTTCCAGTTTGCCACCTGCAATTAACAGCTAATGAGCTAAAGAACTATATTATAAGATGTGACTCAATATCCAAATGATATACATATTTTCCTTTAGTTTTCCAGAGACCTTACAGACTAGGTCACTGTCCAACTTGTACCACAAAACCAGGAATTTATTGTATTAAAAACATATCCTATGCTTTCTAGCCTCTTATTGAACAATTCTGGTGATCCAGAGCACACAGCTTTTTGAAATAGCGCATTTCATTTTGCAGCTTTAATTGTTAGAAAGCTCTTCCTAACATTGAGCAACCTGCTGCCATGTGACCCGAATTCTGCCCCATAAGTACACAGAGTAAATCTTCCCTATTTTCCGAATTCTGGCTGTTTGAAAGCAATGGTGATGGACATGCAAATATTTGAAGAAAGCTTATGGGCTCTATATGTTTCTGTTCTGCAGGATTAAACATCCTTGGTTCTTTCCACTGATCCTCCTGGGGCATGGCTTTTAGGCTCTTTGTTGCCCTGGTTTCCTTCCTCTGGATACAGGGCTATTTATGTCTCCTTTATAATATGGTACTTGACCTGGACATGGTGCTCCAGGAATATGTTACGTTATCTTCTCCCAAGTTCGGGATGTTCTTTCCATGGAATACACTAAGGATATAGTGGCTTTTGGACTGTGATCAATTTTTTTTTGTTCTTAGTAAGCTGGTGGTAAGCAAAAAACAAACAAACAATAAATAAGCTAAACTAAACAAAAAACAAGCAAACAAAACTCAGATCTTTTAAGCCAACTCTGCATTATGATATAAACCAAAATTTTGTAACATCTCCATGGCAAAAGCCCTCTTTAGTGCTAGACATGGCCTGTAGAGAGTGATCAATAAAGTTTTGTTACATTTAATTTCAATAAACTTGGTCTTGTCATCTGTAGATGTGATAAGCTTGCCTTTTAGGTCTTCATCCAGGTTATGGACTTAAAATTGCATTTAACAAAACAGGGCCAAGTTTAGGATATCCTCTCAAGGTAGCTATCCTCAAGAGTAAAAGGAGAAGCACCCCACCATGACCCCCAGGGAGAAACATTGCCAGGGTGCGCCACTGCTACTGATAGGATGTATAGATGCCGTTATCCTTCATTCCTGGCCTCCTTGTTGGTACAAAAGAGGCTGAGCATCACTGGTATTAGAGGCATTTTTACTGCTCAGCTAACTAAAAGTCATATATCCAACCATATTCTTATTAATCAGATTACATTCCATTTTCCACATGAAGAGCATAAGAAATTCTGTCAGAGTGAAAGAATGGGAAATTCTCAGAACTATATTCTTGTCTTAGAGACAAAATAAGAAATTCTCTGGCCGGGCAGGGTGGCTCGCACCTGTAATCCCAGCACTTTGGGAGGCAGAGGCTGGAGAATTGCTGGAGGCCGGGAGTTAAAGACCAGCCTGGGCAACATAGTGAGACCCCTTCTCTACAAAATAATTTAAAATTTAGCTGGGCAGTTGCATGTGCCTGTAGTCCCAGCTACTTGGAAGGTTGTGATGAGTGCATCACTTGGGCCCTGGAGTTCAAGGTTGCAGTGAGCTATGATTGTGCCATTGTACTGTAGCCTGGGTCCCAGGCGACAGAGTGAGATTCTGGGAAAAGAAAGAAAGAGAGAGAGAGAGAGAGAGAGAGAGAAAGAGAGAAAGAGAAAGGAAGGAAGGAAGAAAGGAAGCAAGGAAGGAAGGAAGGAAAGAGAGAGAGAAAGAAAGAGAGAGAGGAAGGAAGGAGGGAGGGAAGGAAGCAAAGAGAGAGAGGAAGAAAGAAAGAGAGAGGAAGGAAGGAAGGACGGAAGGAAAGAGAGAGGGGAAGAAAGAAAGAGAGAAAGGAAGGAAGGATAGAGAGGAAGAAAGAAAGAGAGAGAGAGGAAGGGAGGAAGGAAGGAAAGAGAGAGGAAGAAAGAAAGAGAGAGAGAGAAAGGAAGGAAGGAGAGAGAGGAAGAAAGAAAGAGAGAGAGAAAGGAAGGAAGGAAGGAAGGAAAGAGAGAGGAAGAAAGAGAGAGAGAGAAAGGAAGGAAGGAAGGGAGGAAAGAGAGAGAGGAAGAAAGAAAGACAGAGAGGAAGGAAGGGAGGAAAGAGAGAGAGGAAGAAAGAAAGACAGAGAGAGGAAGGAAGGAAAGGGAGAGAGGAAGAAAGAGAGAGGAAGGAAGGAAAGGGAGAGAGGAAGAAAGAAAGAGAGAGAGAAAGGAAGGAAGGAAGGAAAGAGAGAGGAAGAAAGAGAGAGAGAGAAAGGAAGGAAGGGAGGAAAGAGAGAGAGGAAGAAAGAAAGACAGAGAGGAAGGAAGGGAGGAAAGAGAGAGAGGAAGAAAGAAAGACAGAGAGGAAGGAAGGGAGGAAAGAGAGAGAGGAAGAAAGAAAGACAGAGAGAGGAAGGAAGGAAGGAAGGAAAGAGAGAGGAAGAAAGAGAGAGAGAGGAAGGAAGGAAGGGAGGATAGAGAGAGATGAAGAAAGAGAGAAAGGAAGGAAGTAAGGGAGGAAAGACAGAGAGGAAGAAAAGAGAGAGGAAGGAAGGAAAGAGAGAGTGGTGTTAAGAGAGAGAGAAAGGAAGGAAGGAAAGAGAGAGGAAAACAGAAAGAGAGAGGAAGGAAGGAGAGAGAGGAAGAAAGAAAGAGAAAGGAAGGCAGGAAGGAAAGAGAGAGAGGAAGAAAGAAAGAGAGAGAAAGGAAGGACGGAAGGAAGGAAGGGAGGAAAGAGAGAGAGTAAGAAAGAGAGAGAGGAAGAAGGAAAGAGAGAGAAAAAGGAAGGGCGGAAGGAAGGGAGGAAAGAGAGAAGAAGAAAGAAAGAGAGAGAGGAAGGAAGGAAGGAAGGAAAGAGAGAGAGGAAGAAAGAAAGAGAGAGAGAGGAAGGAAGGAAGGAAAGAGAGAGAGGAAGAAAGAAAGAGAGAGAGAAAGGAAGGAAGGAAGGAAAGAGAGAGAGAAAGAAAGAGAGAGAGAGAAAAGGAAGGAAGGAAGGAAAGAGAGAAAGAAAGAAAGAGAGAGAGAAAAGGAAGGAAGGAAGGAAGGAAGGAGAAAGAAATTTTCAGGACTAGAGCACTGGTTTTCCAACTGTAATCCATGGGGTCTGAGATTAGGGACCAGGGCAGAAAGCCCAAGATGCAGATCTCATTCTCACTTTTATCTTCCATATGTTAAGCTTCTGCGTGGAATTTTAATTGAAAAATGGACACATTCCCTGTAGTAAACTTAGGCAATAGTCTAATAATTACTGCTCTTTTTTGTCACATGTACAGAGACCATCTTTTTAAGTATTTTTTTCTAGAATATTGTTATTCAGAACTAGCTTTTTTTTAAAAAAAATTGTTCTCACTTTGATTATCTTGTAATTCTTTACTCCATGACTCTTCAAAACTGTTACACTGCACAACCATAACTTCAAGCTGTTTCATTGCCTCAAAACATAAATTGTCTGGGCCTGGAGATTCTTCCATAAAACAGCGGAGTCCTCTTTCGCTGTCTCCTCACCTCCCTTTTGCTTTAAATCCTTCCTGACATGCCTGTTCTCACATTTTTGGTTTGAAGGTTTTTCTTTTTGAAAAAGACTATGGAATCTGAATAGGAAGTAAATAATTCTGCTTTGTGACTTTGTACCTAGCCTTCCTTTTCATGTCTATTCTCTCTTCCACCCCACCACTTCAATAACTTGCACATATATTTTGTGCTCTTACAACATTATATCATATTTATTACACGGTCATCTCCCCCAGCAGACTGGAACCTCCTTATATGGCAGAACTGTTGTACATCTATAAAACTCCATACCTAGTACAGTGCTTGGCAATATGCCATAGTGATTAAGAATATTCACTTATTCATTTTAAAAATGTATTAATCAATTACTATGGGACTGGTAATTATCAAGGTGCAAAGGATACACTGGTAAACAAGACAGATGCCATCTCTGCTCTCAACATGCTCACAGTATGATAGGGGAGATAAACATTAAATCAATCACCAAAGCTAATATAGTCTTACAACACTAGACCACAGGCTATACAGATTTCTCAGGCCAGGATAAATAAGTTAAAAGTCAGCTGAGAAAATCAAAAGAGTAATACGTTAGCTCAACCAGCTTTATCTGATGTCCTCTCCATTAGAAAGGCCACCTCCACATGCCCAAAAAGTAGGACCCAAAGGAAATACTAACTGGTGAGATGTTGTATCTTTGGTTTGCTCTCTGTTTTCTTCTTTCCTGAGCTCTTGCTTTCTGTGTCTGAATCATATCCTTTCTTTCTTTCTTTCTTTTTTTTTTTTTTTTTTTTGAGACAGAGTCTCGCTGTCACCCAGGCTGGAGTGCAGTGGTGTGATCTCAGCTCACTGCAACCTCCACCTCCTGGATTCAAGCAATTCCCTTGCCTCAGCTTCCCAAATACCTGGGACTGCAGGTGCCTGCCATCAATCCTGGCTAGTTTTTGTATTTTTAGTAGAGACAGGGTTTCACCATGTTGGCCAGTCTGGTCTTGAACCCCTGAGCTCGTTATCTGCCTGCTTCAGCCTCCCAAAGTGCTGGGGTTACAGGTGTCAGCCACCACGCCCAGCCCATATCCTTTATTTCTGAGTGAGCTATTTCTAGGGAAGCTTATTCTGCTCTTTTATCTCTTGCCCCACAGCACTGAGATCAGCTCTTAGAGTGTACTGCCACGTTGTCTTTTTTTGTTTCCTTTTGTTCAGTTTTTCTACCATTGCTCTTAAGAATTTTTACTCCAACTGGTCTTGAAAGCATGGCTCAAGCTTTGGAGTCAAATAAACCTAAGTTTGATCTTCAACATCATCATTAATTGGCTATTTAGCTAGACTTTGGCAAATTATATTCTCCGAACTTCAATTTTCTCAACTACAAAAAAATTTTACTTTATAAGATTGTCATGCAAATTAGGTGAGATAATTTATATACAGTATGGAACTTAATGGCTAGTATTTACTATATGGCAGCTTAGGTCATTCTCAACATCATCATCCTTATTATAATATGCAGTAATCAGTGTCTGTGAAGTTGAATTAGTTTTTCACATTCTTGTTTCTGGAAATCACTCTCTTTTTCACACGTGTGAATAATTCAGTAATGACCAGAAAATTTTGTTAGTAAACATAGCTTTTAAGTGCTAAAAAGAAGTGTTTTTATTTTTGTTTTTTGTTTTATTTTGTTTTGCCCTGGCATTTTAGTCAATCTATACTTTTAGTATTGTTTCTCTCTTCTAATCATTTTATTAGTTGAATTGAATTAGGTGTTTGGGGGCCCTTGATGGCACCAAAAATTTCATCTCATTAAAATTTATGGAAGAACTCATTCACAACATGATATGGTAAAAACAAACAAAAAGTTGAGCCTTGATTTTTATTTGGGATCCCTATATTTGGCTCAAAGCTGTCTGGGTATCATTCCACTGATTCTGACAGTAATGTGTCCCATCCCTCAGGTATGTTTAGATGGGCAAAATGATTTATTTCTATAGGGCTTTGGGAATGGTTTTCTCACAGTTATCAGTGCATACGAATCTGCAAAATTAAGATGTTTGGTTTCCATCTGTCAAAAAAAAGTTATAGTGGTTTTATTTGTAGAGAGTCTGAACAAGTTTACACAGTGGCTTAAGAACTAAGTCCATCTTAAGTGTCATCATTGAAACCAAGCATACACACATGTGCATGCGTGCCCACTCACACATGCCCACCCCACACATACATACACACAGGGGCCTTGACCTGGAGATCCTAACAGTACAACATAGATACATGCATACAGAGATAGGATAAACATAAAATAAAGATGATTAAGTCAAATCATAAATTAAGTCAGTATTCATCACCTGTAAACTAGCTAAGCCAAATGGCAAAGAAGAATTTCTCTCTGGATAACTGCTATTTATCTACTTTTAGCTCTTCAATTATGGACCAAGACAGGGAGTGATCCCATGCAAGTTCAATCATCTGGATAATTTATAGGTCAATGACTGTATCATGCTCTGTCCTATCTCAGGCCTTTGAAACTATTGTTGCTCAGCATGGAATGCCTTCTGTCACCACTGTTCATTTAACTGCTACTCTATTTTCAGATTTGAATATTGAAGTCTTCCCACTTCACCCCACTGCCAGCCCCACTGCCACCCTCCTACATAACCCTCAAATGCCCCATGTTCACCCTAAGCTAGGAAATCCTTATGAACTAGGTTAAAATTACTAGACTCCTTGTCTCTTTACTCCAGTTCATTGGGATCAAGGGCTGTATGTTGTGCACCAGTACACCTAATGCCTGATTCCAAATAATCATAAAAGATTGTTCAGTACCTGTTAAGTGTATTAAAAGAATAGATATATGTAATTATTACTACTTTTAAGAGCACAAGCTGTAGAGTCACATAGTAGGGTCGTAACTTGATGCACATCCTCATTACTTGCAATCTTGGGCAAATTATTTAACATTCCTGTGCCTCATTTTCCTCATCAGTTAAATGAATACAATGATAGTATTTGCCTCATGAGATGTATATGATCCTAAATGAACTAATGCAGGTAAAGTGTTTAGAACAGTGCCTGGCACACAGATGCGAAAGCTGTTATTAATATTATGTCATATCTGCTTCTACCACTTCTTTAACCCCCACCTGCAATTTCTCTTTCTTTCACACTCAAGAAAACACAGAAATAAAAACAGATTTAAGAGTCAAGGCTATTTGGTAATCTCTTTAAATCACATTTTTTGCAGACTTGCTTTGAGCTCTTGGGGAGGCAACATTATTTTTTTGAAAAAAAAAGAAAAAGAAAACACTACAGGAGAAATGATTCAAGTCCCAGATTGGCAGTATCTACTTGAGAAGAGAGCATTCATTTGAAAGTGCTGGTTATCCTATCAACAGACTAGCTTTTAGACACATTGTGTTTAATTCCATGTTAAATTCCCAGCTTTGTCTTGAGTACCATAGAAAACTCATAATCTATCTGTGAGATATAAAGAAAAGCATACTGAAAGAGGAGTCAGGAAATTGGGCTCTGTAAGTATGTCTTAGAGAAGTTACAATTAATTTAAGCTTCATTAATGCATGAAATAAGGATGTTGCATTTGACTAACTAAAGTCTGAACATTTAATGATTCTATTTGAGATAGAAAAAAAGATTTTAAAGGTAGCATCATGTCAAGAGGAAAAAAATGGACAAAATGAATACCACTGTGAATGAAGATGGGTTGTATTAATAAAGAAAACGAGGTTTAATGGACTCACAGTTCCATTTGGCTGGGAGGCCTCTCAACCATGGCAGAAGGTCAAAGGCATATCTTACAAAGGCACATGGAAGCTGTCAAGGCTTGGGGCTTGCACCCTCTGAAGCCATGCCCCGAGCTGTAACTTCACCCCTTTTAGCCATGGCTGGAGCAGCTGAGACACAAGGCACCACATCCCTTGGCTGGACATAGCAGGGGGGCCCTGGGCCAGGCCCAGGAAACCATTTTTTCCTTCTAGGCCTCTGGGACTGTAATGGGAGGGGCTGCTGTGAAGGTCTCCAACATGCCCTGGAGACATTTTCCCCACTGTCTTGATGATTAACATTCAGCTCTTTGTTACTTATGCAAATTTCTGTGTCAGGCTTGATTTCTCCCCAGGAAATGGGTTTTTCTCTTCTATTGGATTGTCAGGCTGTGCATTTTTCAAACTTTTATGCTCTGCTTCCTCTTGAATGTTTTGCTGCTTTGAAATTTCTTCCACTAGATAACCCAAATCATCTCTCTCAAGTTCAAAGTTCCACATATCTCTAGAGCGGGGAAAAAATCCACCAGCCTCTTTGTTAAAGCACAGCAAGAGTCACCTTTGCTCCAGTTGCCAACAGGTTCCTCATCTTCATCTCAGCCCACCTCAGCCTGAACTTGATTGTCCATATCACTATCAGTATTTTGGTCAAAGCCATTCAACAAGTCTCTAGGAGATTCCAAACTTTCCCACATTTTCCTGTCTTCTGAGCCCTCTACATCTCTAGGAAGTTCTGAACTTTCCCACATTTTTTTCTCTTCTTCTGAGCTCTCCAAACTGTTCCAACCTCTGCCTATTACCCAGTTCCAAAGTTGCTTCCACATTTTCAGGTATCTTTACATCATCACCCTACTCCTGGTACCAGTTTACTGTATTAGTCTGTTCTCATGCTGTTGGCAAAGACATACCTGAGACTGGGTAATTTATAAAGAAAAAGAGGTTTAATGGACTCACAGTTCCACGTGGCTGGGGAGACCTCACAATCATGGCAGAAGATGAAAGGCACATCTTACATGGCAGCAGGTGAATAGGGAATGAGAACCAAGCTAAAAGGGTTTCCCCTTATGAAACCATCAGGTCTCATGAGACTTATTCACTATGGTGAGAAAAGTATGGGAAAAACCACCCCCATGATTCAATTATTTCCTACTGGGTCCCTCCCACAACATGCGGGAATTATGGGAGCTACATTTGGTTGGGGACACAGCCAGACCATATCATGCATCATGGAGGAAAGGAGTCAGCAAGAGTAAGTGAGGCAATCCTGGCTGACTGCCTCCATTTATTCACACTAGCTCTTGAGAGGGTAATTGATGTGAGTGGGTGGACAAAATTAGGGAGCTCATTGACTTTTTCCCCTAAAATGCATTTGGAAATAATCTATGTAGTGCTCTGATTTTAAAGAGCATTTGAACTCAGTAGTTTTGGCCTGGTTTTTAAAGAAGCAAATGGGCACAGACTGGAAGAAAAGACTGGGGAAGGACTTCAAGGGGATAGCAGGGAATAGGAATATGTCTCGAAGGCTACACACCAAACCAGAAACTGTGAGGAGGAGAGGATAGGCCAGTGACCAGCCTAAGCTAGAGTATCTCCAGTCTTTATTAGAAATGATAGAGATGATATTGAGATGATGAAGACAAAACCCTGCCAGCTCACTTCAATGTTAATGTCAGATTTTGAAAATCTAGATTAGAAAACTTATAGTTTATTGAGCAAGAGTGAAACAGTATGTAGCTCTTTTTTTTTTTTTTTTTTTTTTTTGAGACAGGGCATCACTCTGTCACTCAGGCTATATTATAATGGTGCAATATTGTCTCACTGCAACCTTTGCCTCCCAGGTTCAAGTGATTCTCGTGCCTCAGTCACATGAGTAGCTGTGATTACAGGTGTACCCCTCCATGCCTGGCTAATTTTTGTATTTTTAGCAGAGATGTGGTTTTGCCATGTTGCCCAGGCTGGTCTCGAACTCCTGACCTCAAGTGATCTGCCTGCCTCCGTCTACCAAAGTGCTGTGATTACAGGCATGAGCCACCACAGCTGGCCAGATTCTTAATTAAATTTTTATTTTGAAATGAAATTCCTTATTCTAATTTTAGTATGCAGGAATAAGAGATGCAAATTTTACTTCTAAGGGCACTTATATTTGGAGTAAACTGAATCTGCAGTTCATATGACATACAGTTGTTTGTTTTTTAATTCTTAGGCACGAATTGGTTATTCATGTTGCCCTAAAAATTTTGATGTTTTTAAATATTTGCTAAAATCTTACTACATGTTGACTTTTAGATTTCATATATTATCTGATAACAACCATTTTTTAAAAATTAGGCTGATAACCATTTTTAAAAAATAGAGGTGGCTCATGCATGTAATCCCAGCACTTTGGGAGGCCAAGGCAGGTGGATCACCTGAGGTCAGGAGTTCGAGACCAGCCTGACCAACAGGATGAAACCCCATCTCTACTAAAAATACAAAAATTAGCTGGGCATGGTGGCAGGCGCCTGTAATCCCAGCTACTCAGGAGGCTGAGGCAGGAGAATCACTTGAACCTGGGAGGCTGAGATTGCAGCTAGCCGAGATTGTGCCATTGCACTCCAGCCTGGGAAACAGAGCTAGACTCCATCTCAAAAAAAATAATAAATATAAAATAAAATAAAAATAAATCAATCTCTGTTGATATAAAATGGAGATTTTGTTGTTGTAATGTTACCAACTGCACAAGTAAGCATAAATATTACAGAACGTGGAGATTAAGTAGGAAGTATTAAAGGGAATCATGCTACCCAAGTCCTGGGTGTGCTACATGTGCTGAGGAGTCAGGACTTTGCTGAGGTTCACAGAGACAAGCCAAGAATTAATGAAAACAAACCAAAGTGCCATACAGTGGTAAGATGTAAAAGGGAACACTTCCTTTCTGTTACTACAGCTTTACCTATCACAGAGGATCGAGTGTATGTTAGGCAATTATAACTTGAATTCCTTAGAAAATCAGATCTTTACAGCTAAAAACATGCAGCTTGTTACAAATAACAATTAACAAAAACGACAAACACAACCAGTCAATGTGACATCCTACTAGTGGCTATCACAGTTTAAACAATACATATGTAAAGAAATGCCAAGGAAGGAAATAAATTTTAGATTATACCAAGAGACAAAACCCAATAAAGAGGAATGTGTACCTTTTCATGATCACAGATTTTAACTCTGAAACATATATATATATATAAATAAAATATATATATTTATACCTTATAAAGTATTCATATATATATAAATACTTCTGAATATATATATATATATATATATATATATATATAATTTGTTTATTTATTTAAATAGGGTCTCACTCTGTCACCCAGGCTGGAATGCAGTGGTGCAATCATGGCTCACTGCAGCCTGACCTCCCGGGCTCAAGTGATCCTTGCACCTCAGCCTCCCAAGCAGCTGGGACTACAGGCACCCACCACCATGCCCAGCTAATTTTTGTGAATTTTTGATAGAGATGGGGTTTCATCATGTTGCCCAGGCTGGTCTTGAACTCTTGGCCTCAAGCAATCTGCCCACCTTGGACTCCCAAAGTCCTGGGATTACAGGCACGAGCCACTGCACCTGGCCTTTGTGATATATTTAGTATATACACTTGCTAGTGTGTTATTTCCTCTATGAAAGTTTCTCTGCTTGAGGGCAAAGTCCAATCTTCTATTTGTTTTTTAATACATTCAGAGTTTTCCAGTTTGAGGATTTTTTCTAATAAAAATTCTTATCTGAATGTTAGACTTTTTCCTGTAAAGATGAGACAATGATGTCTGATGTTGCAAGTATTTTAAGTGTGTGATGGATGAACTGTTGTTAAGCTCACCAAGCATAGTAATAATTATAATTAATAAATTTTAGGAAGTGATAAATTTAAATATGAAAGAATTAAAATCCCTTCTGTATTTAGAACTTCCATGATTTTTCTCATGGAGTTTCTGCATTAATTCTATGCTGCTCCTCAGGGTAGATATCTTGCTCATATTCAGAGAAAACTTCTTTTTCTAAATGCTTTTTTATGAAGGAAACATAACGTGATACAATAGTAAGAAATGAAGTACTTATTCAGGGCTTACTGATGGATGAGATTAATTTAGAGAAGAAATATAAATAGAAGCAGACTAATCATGTGTATGTGAGACCGTTTCCACATGAGCTATTATGCAGAAGGTACCATTTTGGGTGAGGGTTTGTGTGAACTCCTCTGAGGGCAGAGTTTATTGTTTCAGCTGTTGGTTGCTGAGAGCTTGAGGGCCCTGCCCTCTGTTCTTTGTCTTACTAAGAGCATGCTGACCTGACTGATTACTTCATATCAAGCCCTCATTCTTGGAATGTTCTGTAGAATAATCATATTTGTAATCCCTGTAGCACAGTGCAGCACACCTTTATTTCCTGGTGTATGGTTTTGCTGGAACTCAAAAGACAGAGTTGTTATTTCAAGGACAACATATTTGCTGAGTTAGGTGGTGATGGCTTCCACAAGGATGCTATTATCTCTGAACAAGGACACATTTATTCCAACATTGGAGCTGCCTATCATGAAATGAGTCTAAAGATAGTTTTCACTGATGAGCATTTGTAACCTTTGGTGTTTTTCACATAGCACTCTCTAAAAGCTCCAACAACTGTAGCTCCTAACATTAGGAGTTTATGAGTTCCAATTAACAGTCTTCTGTTACCCGTACATTTAAAAGCCTAACATTTTGATGCCTTTATTTTTCTTTCTGTGATTTCTCCTAAAGATTAAAAAAATGATCTAACAAACACTTGTTGATTATGAGGACATGATGATATATAATAGTTCATTCTCACCCAGTACAAACATACAGATTTTGTACCCTGCCCTTAATGAGTCTCTTATTTGCTGCTTTGTGTTTTTAG
Seq C2 exon
ATGACTAAGAATGGCACAGTAGAATCAGAAGAAGCCAGCACTCTTACACTGGATGACATTTCTGATGATGACATTGACCTGGACAACACAGAGGTAGATGAGTACTTCTTCCTACAACCTTTGCCAACAAAAAAACGAAGAGCTCTGCTGCGTGCCTCTGGAGTGAAAAAGATTGACGTGGAAGAAAAGCACGAACTCCGAGCCATCCGCCTCTCACGAGAGGACTGTGGCTGTGACTGCCGAGTGTTCTGTGATCCAGACACGTGCACCTGCAGCCTGGCTGGCATTAAGTGCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000178662-CSRNP3:NM_001172173:5
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.423 A=NA C2=0.078
Domain overlap (PFAM):
C1:
PF144821=Cut8_N=PD(29.4=17.2)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)