RnoINT0042836 @ rn6
Intron Retention
Gene
ENSRNOG00000019653 | Csrnp2
Description
cysteine and serine rich nuclear protein 2 [Source:RGD Symbol;Acc:1308916]
Coordinates
chr7:142120938-142124775:-
Coord C1 exon
chr7:142124516-142124775
Coord A exon
chr7:142121235-142124515
Coord C2 exon
chr7:142120938-142121234
Length
3281 bp
Sequences
Splice sites
5' ss Seq
AAGGTGCCT
5' ss Score
5.39
3' ss Seq
GCCTGTCTCCTTCCTGGCAGCTG
3' ss Score
10.33
Exon sequences
Seq C1 exon
CAACATCCATCCTGAAGCGACAGAAGCCCCTGCGGAGGAAGAATGTCCGCTTTGACCAGGTGACTGTGTACTACTTCGCCCGGCGACAGGGTTTCACCAGCGTGCCCAGCCAGGGTGGAAGCTCTCTGGGGATGGCCCAACGCCACAACTCTGTGCGCAGTTACACCCTTTGTGAGTTTGCACAAGAGCAAGAGGTGAACCACAGAGAGATTCTTCGTGAGCACCTGAAGGAGGAGAAACTTCATGCCAAGAAAATGAAG
Seq A exon
GTGCCTGTGGGGTGTGGGGTCCGGTGCCTCCTGAGTGTCGAGGCCAAGTGGGAACCCTGTGTCCAGCGAGGTTGATCTGCACTGTTGATCTTGGCAAACAGAGTGCGAGCTCTGTTTCTAATGAAAGTCTCAGATTTCCAAACGTGGTCTCCTCTTGTCATCTCTGGTGGCAGTGTCAACCAGAGATAAAAAGCGACTTTCTCTGCACAGTCCCCTTACTACTTGTCACAAGAATGCTTTTTTAAGCATGGTGTGAATACTCAAAACTTCTCAGGTCTGTCAGCAAGAGAACATAAGTTTCCTGTGTCAGTGGTTGTTTTGATTAGAGCAGGTTTTGGATCTTTGACAGATCTTGCATGGCCCTCTGTGATCTGTACATTGTCACCCCAGAGGGCTGACATGGTCCCCTTGGAGACAGTAGCAGTAGGTGCTGGAGCGATGGCTCAGCACTTGAGAGCATTTGTGGCTCTTACAGAGGGAGCAGCTAGGTTTGGTCCACAGCATTCACATGTTGGCTCACGTGGCTAGACTGGATGTGCTATGTAGACCAGGTGGCTTCGGGTCACTGGTAGATACCTGCCTGCCCGTCTCCCAGGTGCTGATGTTAAAGGCATATACTACCAGACCAGGCCAAATAAATCAGTCTTTAAAAAGAAATACCCCGGGGTTGGGGATTTAGCTCAGTGGTAGAGCGCTTGCCTAGCGAGCGCAAGGCCCTGGGTTCGGTCTCCAGCTCCGAAAAAAAGAAGAAAAAAAAAAAAAAAAAAAAAAAAGAAATACCCCACCTACTCCATACTTGACAGTGACAGCACCAGAAGACTCATCAGACACCCACGTCGACACTCTATCAGAGTTTCCACAAGGCCTCAAACTTCCCAGAGACGAGGGTACAGCTCAGTGGTTAGAGCGCTCCCCAGTGTGCATGAAGCCTCCAGTTCCGTCCCCAACACAGGTTAGAGAATATGAATGAGTTTCTGCACCCCGCCGTGAGGCAGCTGCATTATTTCTAGGGTGTAGACAAACTGAGGCCTGGCTGAGTTGGAGAAGGGTGTCAGGAGGGTGTAGACCAACCAGGTCTCACTCACTCCTCGCAAGCCCTCAGCCTACTCCTAAGGCCTCACACGTGTTACTCTAACCACAGTGAAGTTCACCCTTCCCTTTCTTCTGAGGAATTCCAGTCACTGACCCTGTCCCTCTGTTGCTATAGTAACAGCTAGACAAATAAACGGCTTCTCCCTTGCAGTGAAGGCTCTCTGCCCCTTTCCTAGAAGGCAGCTCCCCCACAGGAGGTGGAGGGGTAATGTGAGAGGTGGCATTGCTGAGTGTCCCGAGCAGGAAGACTGAGCACGCCATGCTGTCAGAGCATGGCGGGAACCTGCCTTCCTCCCCGGAAGGCTTCCTGTCCTTAGCACCTATACAGGCGCAGTCTTGAAATTACCCATGTGCCACGTGTCTTGGGCGCCATTCGATAGTTCTTTCCCCTCAGGGCCCTTCAGTGAACTGTTAGAGCGCTGTAGCCTTCGTGTCATATAATTTTCTAATATTTTAGTTTTGCTTTATCCATATGGGATTTATTACTGTAAGTAGTTTGGATTGGGTGGTGGTTGGTCTTGCCTGGTTTTGTTTTGGGGGCAGGTCTCGTGACGTTTAAGCCTTGAACTTGCAGAGCTGGGGATGGCTTTGGGCTTTTTTATTTCTTTTCTTTTTTTCGGAGCTGGGGACCGAACCCAGGGCCTTGTGCTTGCTAGGCAAGTGCTCTACCACTGAGCTAACCCCCCAACCCCGGCTTTGAGCTTTTTGTTCTTCCTGCTTCTACCACTTCCTAAGTGCTGGCATTACTAAGTGTAAGCCATCCACTATACCTGGCCTTAACTTTTCTCTCCCCCAAAATATCTAGCTGTCCCAGCCCTTTCATGACTGGGTGCCTTGCTCTGCAATGCCCCTTCTGTGGAGATCTGAATTCTCCTGCATCTGATGGCTTTCCTTTGGGGGCAGCGGGAATGCCGGGGACAGGCCAGTTTGGGGACACATGGGAATGGTTGTAAGGATACAGAGAGGAGCCTGGCAGTTGCTTGCCTGGTGTATAGGGAATAGACTTAGAAGCTGTAAGCCCCACTCCGCTAGCTCCCCACAAGCAGTGAAGTGCACTGCTCACCGGTGGCTCAGGCCTGTTGCGTCACCCCTCGCAGGAGCTGTTCGTGCCCCAGCACTGTGGCTGTCTGATGAAATAGACTGAAGACGCCAGCCACTGGGCTTTCAGCCCGCCAGCAGCTTCCAGGGCCCCAGGGGCCGGGCCTCGTTTTCTTTACTTAGATCCTCTAGTGAGTTTGAAGAACTCATTCAGCCAGAAACTCTCTCCAGCCTGTCCTTCTAGAGTCCTGCCTGGCTTTCTGTCCACCTTGCAGAAAACCCAGCTTTCCGCTGATGGATATCACACAGTGTTATTCAGACTGCCCTACCTCACACCGTTTTCCTTTGAAGTCAAATAAATGAGAATTAGAAGGAGGAGAGTACATGCTTCTTCTAGCCCCTGTGCTGGAGTGGTGTTCGCAGTTGTGAATAATAACCACCACCCCCCAGCAGTGAGGTGCAGGTCTTCTCACACGGTGACTATTTACCGCGTGGGGATTCTGTTGACAAAGACCTGGGAAGCTGGTGCCATTCTCCAGTGCACCCTTTCTTTCTGAAGGTAGCTTTGGGTTCTCCTGAGGGCATTTTGTAAGGTTCCCAGTATCGCTAAGGAACACCCAGCCTCTGGTACACTGTTAGCTCCATGCAGGTGACAGTTTAGAAATGGAGGGAATGCTGTGGAAATGTTATCTCCTAGGAGGGAAGACGAGGTGTGTATAAAAACCCCTTTAGGCAGGTTCTTTTTTTTTTTTCCAGAGCTGGGGACAGAACCCAGGGCCTTGCGCTTCCTAGGCAAGCGCTCTACCACTGAGCTAAATCCCCAACCCCCTTTAGGCAGGTTTGCTGTGCTGCTCAGGCCCCCCAGCCTCTCCTTGCTAAGCAGCTGGGGTGACAGCTCTGTGCTGCCGCAGCTGGCAGAGACTGGTTTTGAGACTAGAACTGAGAAGGGCGAAGGCTCTGGATTTTAATCCTGTGCAGTCCAGAATGGCAACCACTGATTATTTTGGAAATCAGATAAAACCCAGTTCCAGTCTGCACATTTCTGGTGCTCAGCTCTGGGACAACACAGCTCCTGTCACTGCAGAACTCGGGGGGCTCCGTCACTGTTGGTAATGCTCCAAAGCTGACTTAGCCTGTCTCCTTCCTGGCAG
Seq C2 exon
CTGACGAAGAACGGGACGGTGGAGTCCGTGGAGGCCGACGGCTTGACCCTCGACGACGTTTCAGACGAAGACATCGATGTGGAGAACGTGGAGGTGGATGACTACTTCTTCCTCCAGCCCCTGCCCACCAAACGACGGCGGGCCCTGCTGAGGGCTTCCGGGGTCCACCGCATCGATGCTGAGGAGAAACAGGAGCTCAGAGCCATCCGCTTGTCTCGGGAAGAGTGTGGCTGTGACTGTCGGCTCTACTGTGACCCAGAAGCCTGTGCCTGTAGCCAGGCTGGGATTAAATGCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000019653:ENSRNOT00000026613:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.310 A=NA C2=0.020
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]