RnoEX6034095 @ rn6
Exon Skipping
Gene
ENSRNOG00000019653 | Csrnp2
Description
cysteine and serine rich nuclear protein 2 [Source:RGD Symbol;Acc:1308916]
Coordinates
chr7:142120938-142126033:-
Coord C1 exon
chr7:142125802-142126033
Coord A exon
chr7:142124516-142124775
Coord C2 exon
chr7:142120938-142121234
Length
260 bp
Sequences
Splice sites
3' ss Seq
CCATGTGCTCCTTTTCACAGCAA
3' ss Score
8.64
5' ss Seq
AAGGTGCCT
5' ss Score
5.39
Exon sequences
Seq C1 exon
AGTCCTCATGCTCCTGGCTAGCTGGTGGTGAGCAGCTTGGGGCCATCGTGGTTGGCTCCCCAAGGAGACCTTTGGAAGCCAATGGATGCGTTCTCGGGCTCAGGCCTCAAGAGGAAATTCGATGATGTGGACGTGGGCTCGTCAGTCTCCAACTCGGATGATGAGATGTCCAGCAGCGACAGTGCAGACAGCTGCGACAGCCTTAACCCTCCTACGACTGCCAGCTTCACAC
Seq A exon
CAACATCCATCCTGAAGCGACAGAAGCCCCTGCGGAGGAAGAATGTCCGCTTTGACCAGGTGACTGTGTACTACTTCGCCCGGCGACAGGGTTTCACCAGCGTGCCCAGCCAGGGTGGAAGCTCTCTGGGGATGGCCCAACGCCACAACTCTGTGCGCAGTTACACCCTTTGTGAGTTTGCACAAGAGCAAGAGGTGAACCACAGAGAGATTCTTCGTGAGCACCTGAAGGAGGAGAAACTTCATGCCAAGAAAATGAAG
Seq C2 exon
CTGACGAAGAACGGGACGGTGGAGTCCGTGGAGGCCGACGGCTTGACCCTCGACGACGTTTCAGACGAAGACATCGATGTGGAGAACGTGGAGGTGGATGACTACTTCTTCCTCCAGCCCCTGCCCACCAAACGACGGCGGGCCCTGCTGAGGGCTTCCGGGGTCCACCGCATCGATGCTGAGGAGAAACAGGAGCTCAGAGCCATCCGCTTGTCTCGGGAAGAGTGTGGCTGTGACTGTCGGCTCTACTGTGACCCAGAAGCCTGTGCCTGTAGCCAGGCTGGGATTAAATGCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000019653-'8-5,'8-4,10-5=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.706 A=0.310 C2=0.020
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GATGAGATGTCCAGCAGCGAC
R:
CACACTCTTCCCGAGACAAGC
Band lengths:
302-562
Functional annotations
There are 1 annotated functions for this event
PMID: 19389623
Encodes an experimentally validated Eukaryotic Linear Motif (ELM). Method: coimmunoprecipitation, far western blotting, mutation analysis, pull down. ELM ID: ELMI002633; ELM sequence: TSILKR; Overlap: FULL
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]